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Rtl8c Gene Detail
Summary
  • Symbol
    Rtl8c
  • Name
    retrotransposon Gag like 8C
  • Synonyms
    2900027G03Rik, Cxx1c, Mar8.1, Mart8a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920115
    NCBI Gene: 72865
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:52609999-52610399 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.82 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920115
 protein coding gene ChrX:52609889-52611102 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035726
 protein coding gene ChrX:48867649-48868049 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0035629
 protein coding gene ChrX:50143460-50143860 (+)
BALB/cJ MGP_BALBcJ_G0035696
 protein coding gene ChrX:48303719-48304119 (-)
C3H/HeJ MGP_C3HHeJ_G0035399
 protein coding gene ChrX:49157676-49159239 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036226
 protein coding gene ChrX:50101719-50102119 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033078
 protein coding gene ChrX:46201527-46201898 (-)
CAST/EiJ MGP_CASTEiJ_G0034693
 protein coding gene ChrX:36514919-36515322 (-)
CBA/J MGP_CBAJ_G0035374
 protein coding gene ChrX:51486532-51486932 (-)
DBA/2J MGP_DBA2J_G0035527
 protein coding gene ChrX:48500405-48500805 (+)
FVB/NJ MGP_FVBNJ_G0035476
 protein coding gene ChrX:48117320-48117720 (+)
LP/J MGP_LPJ_G0035615
 protein coding gene ChrX:49246050-49246450 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035515
 protein coding gene ChrX:52987327-52987727 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036244
 protein coding gene ChrX:48811986-48812389 (-)
PWK/PhJ MGP_PWKPhJ_G0034390
 protein coding gene ChrX:36014048-36014451 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034233
 protein coding gene ChrX:37292432-37292803 (-)
WSB/EiJ MGP_WSBEiJ_G0034836
 protein coding gene ChrX:48374442-48374845 (-)



Homology
more
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
  • Synonyms
    CXX1b, FAM127B, MAR8A, SIRH6
  • Links
    NCBI Gene ID: 26071
    neXtProt AC: NX_Q9BWD3
    UniProt: Q9BWD3

  • Chr Location
    Xq26.3; chrX:135050932-135052196 (-)  GRCh38
  • Human Ortholog
    RTL8B, retrotransposon Gag like 8B
  • Synonyms
    CXX1c, FAM127C, MAR8B, SIRH4
  • Links
    NCBI Gene ID: 441518
    neXtProt AC: NX_Q17RB0
    UniProt: Q17RB0

  • Chr Location
    Xq26.3; chrX:135020513-135022542 (-)  GRCh38
  • Human Ortholog
    RTL8C, retrotransposon Gag like 8C
  • Synonyms
    CXX1, FAM127A, Mar8, MAR8C, Mart8, MART8C, SIRH5
  • Links
    NCBI Gene ID: 8933
    neXtProt AC: NX_A6ZKI3
    UniProt: A6ZKI3

  • Chr Location
    Xq26.3; chrX:135032355-135033546 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    742
  • Tissues
    7
  • cDNA Data
    42
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000051851 Ensembl Gene Model | MGI Sequence Detail 401 C57BL/6J ±  kb
transcript ENSMUST00000063384 Ensembl | MGI Sequence Detail 401 Not Applicable  
polypeptide ENSMUSP00000069901 Ensembl | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032549 Domain of unknown function DUF4939
    IPR032567 LDOC1-related
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:336757 Mohan HM, et al., RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control. Cell Mol Life Sci. 2022 Mar 5;79(3):176
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory