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Rtl8c Gene Detail
Summary
  • Symbol
    Rtl8c
  • Name
    retrotransposon Gag like 8C
  • Synonyms
    2900027G03Rik, Cxx1c, Mar8.1, Mart8a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920115
    NCBI Gene: 72865
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:53608032-53608432 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 29.82 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920115
protein coding gene ChrX:53607922-53609135 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035726
protein coding gene ChrX:48867649-48868049 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0035629
protein coding gene ChrX:50143460-50143860 (+)
BALB/cJ MGP_BALBcJ_G0035696
protein coding gene ChrX:48303719-48304119 (-)
C3H/HeJ MGP_C3HHeJ_G0035399
protein coding gene ChrX:49157676-49159239 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036226
protein coding gene ChrX:50101719-50102119 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033078
protein coding gene ChrX:46201527-46201898 (-)
CAST/EiJ MGP_CASTEiJ_G0034693
protein coding gene ChrX:36514919-36515322 (-)
CBA/J MGP_CBAJ_G0035374
protein coding gene ChrX:51486532-51486932 (-)
DBA/2J MGP_DBA2J_G0035527
protein coding gene ChrX:48500405-48500805 (+)
FVB/NJ MGP_FVBNJ_G0035476
protein coding gene ChrX:48117320-48117720 (+)
LP/J MGP_LPJ_G0035615
protein coding gene ChrX:49246050-49246450 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035515
protein coding gene ChrX:52987327-52987727 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036244
protein coding gene ChrX:48811986-48812389 (-)
PWK/PhJ MGP_PWKPhJ_G0034390
protein coding gene ChrX:36014048-36014451 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034233
protein coding gene ChrX:37292432-37292803 (-)
WSB/EiJ MGP_WSBEiJ_G0034836
protein coding gene ChrX:48374442-48374845 (-)



Homology
more
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
  • Vertebrate Orthologs
    11
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
    Orthology source: HGNC
  • Synonyms
    CXX1b, FAM127B, MAR8A, SIRH6
  • Links
    NCBI Gene ID: 26071
    neXtProt AC: NX_Q9BWD3
    UniProt: Q9BWD3

  • Chr Location
    Xq26.3; chrX:135050932-135052191 (-)  GRCh38.p7

  • Human Ortholog
    RTL8B, retrotransposon Gag like 8B
    Orthology source: HGNC
  • Synonyms
    CXX1c, FAM127C, MAR8B, SIRH4
  • Links
    NCBI Gene ID: 441518
    neXtProt AC: NX_Q17RB0
    UniProt: Q17RB0

  • Chr Location
    Xq26.3; chrX:135020504-135022536 (-)  GRCh38.p7

  • Human Ortholog
    RTL8C, retrotransposon Gag like 8C
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CXX1, FAM127A, Mar8, MAR8C, Mart8, MART8C, SIRH5
  • Links
    NCBI Gene ID: 8933
    neXtProt AC: NX_A6ZKI3
    UniProt: A6ZKI3

  • Chr Location
    Xq26.3; chrX:135032303-135033546 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000051851 Ensembl Gene Model | MGI Sequence Detail 401 C57BL/6J ±  kb
transcript ENSMUST00000063384 Ensembl | MGI Sequence Detail 401 Not Applicable  
polypeptide ENSMUSP00000069901 Ensembl | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032549 Domain of unknown function DUF4939
    IPR032567 LDOC1-related
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 2
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory