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Hdhd3 Gene Detail
Summary
  • Symbol
    Hdhd3
  • Name
    haloacid dehalogenase-like hydrolase domain containing 3
  • Synonyms
    2810435D12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919998
    NCBI Gene: 72748
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:62499054-62502200 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 33.16 cM, cytoband C1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919998
protein coding gene Chr4:62499008-62503467 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028355
protein coding gene Chr4:61480280-61484739 (-)
A/J MGP_AJ_G0028316
protein coding gene Chr4:59254794-59259253 (-)
AKR/J MGP_AKRJ_G0028265
protein coding gene Chr4:60901752-60906211 (-)
BALB/cJ MGP_BALBcJ_G0028336
protein coding gene Chr4:59432923-59437382 (-)
C3H/HeJ MGP_C3HHeJ_G0028054
protein coding gene Chr4:61403920-61408379 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028776
protein coding gene Chr4:63599388-63603847 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026082
protein coding gene Chr4:56546598-56551060 (-)
CAST/EiJ MGP_CASTEiJ_G0027490
protein coding gene Chr4:59345907-59350366 (-)
CBA/J MGP_CBAJ_G0028022
protein coding gene Chr4:65795797-65800256 (-)
DBA/2J MGP_DBA2J_G0028172
protein coding gene Chr4:59114750-59119209 (-)
FVB/NJ MGP_FVBNJ_G0028136
protein coding gene Chr4:58365345-58369804 (-)
LP/J MGP_LPJ_G0028268
protein coding gene Chr4:61760474-61764933 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028163
protein coding gene Chr4:68924262-68928721 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028812
protein coding gene Chr4:61000993-61005452 (-)
PWK/PhJ MGP_PWKPhJ_G0027217
protein coding gene Chr4:57593271-57597847 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027046
protein coding gene Chr4:58451215-58455785 (-)
WSB/EiJ MGP_WSBEiJ_G0027570
protein coding gene Chr4:60983414-60987870 (-)



Homology
more
  • Human Ortholog
    HDHD3, haloacid dehalogenase like hydrolase domain containing 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HDHD3, haloacid dehalogenase like hydrolase domain containing 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    2810435D12Rik, C9orf158
  • Links
    NCBI Gene ID: 81932
    neXtProt AC: NX_Q9BSH5
    UniProt: Q9BSH5

  • Chr Location
    9q32; chr9:113373416-113377009 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72748 NCBI Gene Model | MGI Sequence Detail 3147 C57BL/6J ±  kb
transcript NM_024257 RefSeq | MGI Sequence Detail 1098 Not Specified  
polypeptide Q9CYW4 UniProt | EBI | MGI Sequence Detail 251 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 36

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory