Mir99ahg Gene Detail

Summary

• Symbol
  Mir99ahg
• Name
  Mir99a and Mirlet7c-1 host gene (non-protein coding)
• Synonyms
  2810055G20Rik, D730043B02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1919929
  NCBI Gene: 77994
• Alliance
  gene page
• Transcription Start Sites
  42 TSS

Location &
Maps

• Sequence Map
  Chr16:77126216-77355316 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 44.53 cM, cytoband C3.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1018 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919929	lncRNA gene	Chr16:77033184-77570315 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015324	unclassified non-coding RNA gene	Chr16:77331516-77823728 (+)
A/J	MGP_AJ_G0015299	unclassified non-coding RNA gene	Chr16:73931501-74391499 (+)
AKR/J	MGP_AKRJ_G0015262	unclassified non-coding RNA gene	Chr16:76155773-76628469 (+)
BALB/cJ	MGP_BALBcJ_G0015262	unclassified non-coding RNA gene	Chr16:74324962-74788644 (+)
C3H/HeJ	MGP_C3HHeJ_G0015086	unclassified non-coding RNA gene	Chr16:76609903-77081351 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015716	unclassified non-coding RNA gene	Chr16:79826938-80315583 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013458	unclassified non-coding RNA gene	Chr16:72395564-72853367 (+)
CAST/EiJ	MGP_CASTEiJ_G0014637	unclassified non-coding RNA gene	Chr16:76978514-77493520 (+)
CBA/J	MGP_CBAJ_G0015065	unclassified non-coding RNA gene	Chr16:83239402-83746592 (+)
DBA/2J	MGP_DBA2J_G0015160	unclassified non-coding RNA gene	Chr16:73771188-74237687 (+)
FVB/NJ	MGP_FVBNJ_G0015167	unclassified non-coding RNA gene	Chr16:73134935-73592411 (+)
LP/J	MGP_LPJ_G0015240	unclassified non-coding RNA gene	Chr16:77087846-77567190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015193	unclassified non-coding RNA gene	Chr16:86338195-86957520 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015756	unclassified non-coding RNA gene	Chr16:76483030-76961216 (+)
PWK/PhJ	MGP_PWKPhJ_G0014427	unclassified non-coding RNA gene	Chr16:73964090-74436873 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014215	unclassified non-coding RNA gene	Chr16:76092699-76583891 (+)
WSB/EiJ	MGP_WSBEiJ_G0014744	unclassified non-coding RNA gene	Chr16:76683701-77181370 (+)

Homology

• Gene Tree
  Mir99ahg
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  4
• Genomic Mutations
  4 involving Mir99ahg
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  707
• Tissues
  1
• cDNA Data
  21
• Literature Summary
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  95
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000090386 (Evidence)
• NCBI Gene
  77994

Representative Sequences			Length	Strain/Species
genomic	77994	NCBI Gene Model | MGI Sequence Detail	229101	C57BL/6J
transcript	NR_015543	RefSeq | MGI Sequence Detail	3151	C57BL/6
polypeptide	Q8BGM3	UniProt | EBI | MGI Sequence Detail	121	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 22

  cDNA 21

  Other 1

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:1925244

References

• Summaries
  All 32

  Developmental Gene Expression 3

  Diseases 1

  Phenotypes 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:336502 Han JS, et al., Notch directs telencephalic development and controls neocortical neuron fate determination by regulating microRNA levels. Development. 2023 Jun 1;150(11):dev201408

TSS for Mir99ahg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139047	Chr16:77126083-77126133 (+)	-108 bp
Tssr139048	Chr16:77126134-77126241 (+)	-28 bp
Tssr139049	Chr16:77126245-77126265 (+)	39 bp
Tssr139050	Chr16:77126386-77126397 (+)	176 bp
Tssr139051	Chr16:77126399-77126413 (+)	190 bp
Tssr139052	Chr16:77126430-77126441 (+)	220 bp
Tssr139053	Chr16:77126459-77126507 (+)	267 bp
Tssr139054	Chr16:77126517-77126544 (+)	315 bp
Tssr139055	Chr16:77135186-77135202 (+)	8,978 bp
Tssr139056	Chr16:77137459-77137492 (+)	11,260 bp
Tssr139057	Chr16:77137541-77137557 (+)	11,333 bp
Tssr139058	Chr16:77148583-77148594 (+)	22,373 bp
Tssr139059	Chr16:77148638-77148640 (+)	22,423 bp
Tssr139060	Chr16:77158406-77158414 (+)	32,194 bp
Tssr139061	Chr16:77159329-77159347 (+)	33,122 bp
Tssr139062	Chr16:77165264-77165285 (+)	39,059 bp
Tssr139063	Chr16:77165764-77165790 (+)	39,561 bp
Tssr139064	Chr16:77168470-77168500 (+)	42,269 bp
Tssr139065	Chr16:77171593-77171618 (+)	45,390 bp
Tssr139066	Chr16:77172215-77172253 (+)	46,018 bp
Tssr139067	Chr16:77184803-77184820 (+)	58,596 bp
Tssr139068	Chr16:77186810-77186826 (+)	60,602 bp
Tssr139069	Chr16:77186860-77186872 (+)	60,650 bp
Tssr139074	Chr16:77218511-77218525 (+)	92,302 bp
Tssr139075	Chr16:77218535-77218546 (+)	92,325 bp
Tssr139076	Chr16:77218610-77218625 (+)	92,402 bp
Tssr139077	Chr16:77219803-77219836 (+)	93,604 bp
Tssr139078	Chr16:77229725-77229729 (+)	103,511 bp
Tssr139079	Chr16:77245366-77245393 (+)	119,164 bp
Tssr139080	Chr16:77262926-77262946 (+)	136,720 bp
Tssr139081	Chr16:77262963-77262989 (+)	136,760 bp
Tssr139083	Chr16:77280456-77280479 (+)	154,252 bp
Tssr139085	Chr16:77284695-77284703 (+)	158,483 bp
Tssr139086	Chr16:77294407-77294436 (+)	168,206 bp
Tssr139087	Chr16:77294539-77294568 (+)	168,338 bp
Tssr139088	Chr16:77296894-77296923 (+)	170,693 bp
Tssr139089	Chr16:77297056-77297087 (+)	170,856 bp
Tssr139090	Chr16:77297098-77297120 (+)	170,893 bp
Tssr139091	Chr16:77297430-77297451 (+)	171,225 bp
Tssr139092	Chr16:77298162-77298183 (+)	171,957 bp
Tssr139093	Chr16:77327629-77327660 (+)	201,429 bp
Tssr139094	Chr16:77342726-77342729 (+)	216,512 bp