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Skida1 Gene Detail
Summary
  • Symbol
    Skida1
  • Name
    SKI/DACH domain containing 1
  • Synonyms
    2810030E01Rik, 5730507N06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919918
    NCBI Gene: 72668
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:18040676-18049051 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 12.83 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919918
protein coding gene Chr2:18036669-18049051 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025372
protein coding gene Chr2:15709698-15718077 (-)
A/J MGP_AJ_G0025350
protein coding gene Chr2:15080389-15088786 (-)
AKR/J MGP_AKRJ_G0025318
protein coding gene Chr2:15582622-15590981 (-)
BALB/cJ MGP_BALBcJ_G0025345
protein coding gene Chr2:15110391-15118757 (-)
C3H/HeJ MGP_C3HHeJ_G0025105
protein coding gene Chr2:15490288-15498663 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025788
protein coding gene Chr2:16086022-16094363 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023203
protein coding gene Chr2:14509865-14518192 (-)
CAST/EiJ MGP_CASTEiJ_G0024569
protein coding gene Chr2:15458090-15466457 (-)
CBA/J MGP_CBAJ_G0025084
protein coding gene Chr2:16825841-16834211 (-)
DBA/2J MGP_DBA2J_G0025216
protein coding gene Chr2:15011112-15019471 (-)
FVB/NJ MGP_FVBNJ_G0025179
protein coding gene Chr2:14817097-14825564 (-)
LP/J MGP_LPJ_G0025303
protein coding gene Chr2:15583613-15591979 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025210
protein coding gene Chr2:16762422-16770790 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025846
protein coding gene Chr2:15517751-15526138 (-)
PWK/PhJ MGP_PWKPhJ_G0024318
protein coding gene Chr2:14856902-14865354 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024118
protein coding gene Chr2:15639189-15647557 (-)
WSB/EiJ MGP_WSBEiJ_G0024639
protein coding gene Chr2:15615215-15623574 (-)



Homology
more
  • Human Ortholog
    SKIDA1, SKI/DACH domain containing 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SKIDA1, SKI/DACH domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C10orf140, DLN-1
  • Links
    NCBI Gene ID: 387640
    neXtProt AC: NX_Q1XH10
    UniProt: Q1XH10

  • Chr Location
    10p12.31; chr10:21513475-21525682 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000054074 Ensembl Gene Model | MGI Sequence Detail 8376 C57BL/6J ±  kb
    transcript ENSMUST00000091420 Ensembl | MGI Sequence Detail 4376 Not Applicable  
    polypeptide ENSMUSP00000088982 Ensembl | MGI Sequence Detail 909 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • Protein Ontology
      PR:000030279 SKI/DACH domain-containing protein 1
    • InterPro Domains
      IPR027971 Elongin BC and Polycomb repressive complex 2-associated protein EPOP
      IPR009061 Putative DNA-binding domain superfamily
      IPR037000 Ski-like, DNA-binding domain superfamily
      IPR003380 SKI/SNO/DAC domain
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:1917872, MGI:2139426
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 2
      Phenotypes 7
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory