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2700097O09Rik Gene Detail
Summary
  • Symbol
    2700097O09Rik
  • Name
    RIKEN cDNA 2700097O09 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919908
    NCBI Gene: 72658
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:55045661-55080110 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 23.85 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    280 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919908
protein coding gene Chr12:55045661-55080452 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019742
protein coding gene Chr12:54003485-54248793 (-)
A/J MGP_AJ_G0019704
protein coding gene Chr12:52112761-52130326 (-)
AKR/J MGP_AKRJ_G0019675
protein coding gene Chr12:53665326-53929698 (-)
BALB/cJ MGP_BALBcJ_G0019682
protein coding gene Chr12:52394700-52429991 (-)
C3H/HeJ MGP_C3HHeJ_G0019485
protein coding gene Chr12:53782152-54018695 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020130
protein coding gene Chr12:55667688-55706936 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017753
protein coding gene Chr12:50369730-50404591 (-)
CAST/EiJ MGP_CASTEiJ_G0019038
protein coding gene Chr12:48794670-48859930 (-)
CBA/J MGP_CBAJ_G0019457
protein coding gene Chr12:57583690-57815279 (-)
DBA/2J MGP_DBA2J_G0019571
protein coding gene Chr12:51953088-51987893 (-)
FVB/NJ MGP_FVBNJ_G0019560
protein coding gene Chr12:51368563-51406977 (-)
LP/J MGP_LPJ_G0019643
protein coding gene Chr12:54066692-54102995 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019596
protein coding gene Chr12:59181128-59419725 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020168
protein coding gene Chr12:53155126-53257163 (-)
PWK/PhJ MGP_PWKPhJ_G0018805
protein coding gene Chr12:46529158-46564802 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018599
protein coding gene Chr12:47747718-47770675 (-)
WSB/EiJ MGP_WSBEiJ_G0019089
protein coding gene Chr12:53631812-53862404 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000062198 Ensembl Gene Model | MGI Sequence Detail 34450 C57BL/6J ±  kb
    transcript ENSMUST00000021406 Ensembl | MGI Sequence Detail 1105 Not Applicable  
    polypeptide ENSMUSP00000021406 Ensembl | MGI Sequence Detail 301 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal
      IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
    Molecular
    Reagents
    less
    • All nucleic 30
      cDNA 30

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2145041
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 1
      Phenotypes 14
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:236757 West DB, et al., Transcriptome Analysis of Targeted Mouse Mutations Reveals the Topography of Local Changes in Gene Expression. PLoS Genet. 2016 Feb;12(2):e1005691

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory