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Snhg5 Gene Detail
Summary
  • Symbol
    Snhg5
  • Name
    small nucleolar RNA host gene 5
  • Synonyms
    2810026P18Rik, mU50HG-b
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919905
    NCBI Gene: 72655
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:88403105-88404950 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 47.24 cM, cytoband E3.2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    19 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919905
 lncRNA gene Chr9:88377321-88405615 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015751
 unclassified non-coding RNA gene Chr9:89401408-89403807 (-)
A/J MGP_AJ_G0015728
 unclassified non-coding RNA gene Chr9:86284930-86286541 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0015689
 unclassified non-coding RNA gene Chr9:85894974-85898249 (-)
C3H/HeJ MGP_C3HHeJ_G0015511
 unclassified non-coding RNA gene Chr9:88775385-88777264 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016145
 unclassified non-coding RNA gene Chr9:91812612-91907741 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0015066
 unclassified non-coding RNA gene Chr9:89232768-89234376 (-)
CBA/J MGP_CBAJ_G0015491
 unclassified non-coding RNA gene Chr9:95031586-95033199 (-)
DBA/2J MGP_DBA2J_G0015589
 unclassified non-coding RNA gene Chr9:85807434-85809047 (-)
FVB/NJ MGP_FVBNJ_G0015594
 unclassified non-coding RNA gene Chr9:84858460-84860073 (-)
LP/J MGP_LPJ_G0015669
 unclassified non-coding RNA gene Chr9:89603015-89605974 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015617
 unclassified non-coding RNA gene Chr9:96674726-96676862 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016187
 unclassified non-coding RNA gene Chr9:88439019-88440632 (-)
PWK/PhJ MGP_PWKPhJ_G0014847
 unclassified non-coding RNA gene Chr9:85959384-85961488 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014635
 unclassified non-coding RNA gene Chr9:88621710-88623573 (-)
WSB/EiJ MGP_WSBEiJ_G0015170
 unclassified non-coding RNA gene Chr9:88475771-88478750 (-)



Homology
more
  • Human Ortholog
    SNHG5, small nucleolar RNA host gene 5
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG5, small nucleolar RNA host gene 5
  • Synonyms
    C6orf160, LINC00044, NCRNA00044, U50HG
  • Links
    NCBI Gene ID: 387066

  • Chr Location
    6q14.3; chr6:85650491-85678932 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    723
  • Tissues
    14
  • cDNA Data
    52
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    64
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 72655 NCBI Gene Model | MGI Sequence Detail 1846 C57BL/6J ±  kb
transcript NR_040721 RefSeq | MGI Sequence Detail 1084 C57BL/6  
polypeptide Q78H50 UniProt | EBI | MGI Sequence Detail 37 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 54
    cDNA 53
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:212084 Herriges MJ, et al., Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development. Genes Dev. 2014 Jun 15;28(12):1363-79
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory