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Ccdc12 Gene Detail
Summary
  • Symbol
    Ccdc12
  • Name
    coiled-coil domain containing 12
  • Synonyms
    2700094L05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919904
    NCBI Gene: 72654
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:110656503-110711593 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 60.37 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    351 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919904
protein coding gene Chr9:110656503-110711606 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035353
protein coding gene Chr9:112822303-112883616 (+)
A/J MGP_AJ_G0035334
protein coding gene Chr9:108716916-108772366 (+)
AKR/J MGP_AKRJ_G0035265
protein coding gene Chr9:111414684-111474823 (+)
BALB/cJ MGP_BALBcJ_G0035329
protein coding gene Chr9:108465959-108521003 (+)
C3H/HeJ MGP_C3HHeJ_G0035037
protein coding gene Chr9:111924797-111979959 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035851
protein coding gene Chr9:115886476-115952171 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032737
protein coding gene Chr9:105936239-105990067 (+)
CAST/EiJ MGP_CASTEiJ_G0034343
protein coding gene Chr9:111718736-111775740 (+)
CBA/J MGP_CBAJ_G0035004
protein coding gene Chr9:120196143-120263541 (+)
DBA/2J MGP_DBA2J_G0035163
protein coding gene Chr9:108178091-108235766 (+)
FVB/NJ MGP_FVBNJ_G0035110
protein coding gene Chr9:107007269-107063307 (+)
LP/J MGP_LPJ_G0035242
protein coding gene Chr9:113115104-113173094 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035150
protein coding gene Chr9:121537688-121599032 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035871
protein coding gene Chr9:111755751-111817334 (+)
PWK/PhJ MGP_PWKPhJ_G0034050
protein coding gene Chr9:108422658-108480905 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033885
protein coding gene Chr9:111837320-111896652 (+)
WSB/EiJ MGP_WSBEiJ_G0034464
protein coding gene Chr9:111622352-111682848 (+)



Homology
more
  • Human Ortholog
    CCDC12, coiled-coil domain containing 12
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC12, coiled-coil domain containing 12
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 151903
    neXtProt AC: NX_Q8WUD4
    UniProt: Q8WUD4

  • Chr Location
    3p21.31; chr3:46917905-46982031 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41751
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CCDC12
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72654 NCBI Gene Model | MGI Sequence Detail 55091 C57BL/6J ±  kb
transcript NM_028312 RefSeq | MGI Sequence Detail 845 C57BL/6  
polypeptide Q8R344 UniProt | EBI | MGI Sequence Detail 166 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR013169 mRNA splicing factor, Cwf18
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 7
Other
Accession IDs
less
MGI:2143378
References
more
  • Summaries
    All 30
    Phenotypes 10
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory