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Smim18 Gene Detail
Summary
  • Symbol
    Smim18
  • Name
    small integral membrane protein 18
  • Synonyms
    2700090O03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919882
    NCBI Gene: 72632
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:33742112-33747770 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 20.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919882
protein coding gene Chr8:33742112-33747876 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033528
protein coding gene Chr8:32204467-32209947 (-)
A/J MGP_AJ_G0033508
protein coding gene Chr8:30971585-30977223 (-)
AKR/J MGP_AKRJ_G0033432
protein coding gene Chr8:31939611-31946831 (-)
BALB/cJ MGP_BALBcJ_G0033504
protein coding gene Chr8:31092915-31098583 (-)
C3H/HeJ MGP_C3HHeJ_G0033216
protein coding gene Chr8:32264095-32271247 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034020
protein coding gene Chr8:33442886-33448544 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030969
protein coding gene Chr8:27975411-27981877 (-)
CAST/EiJ MGP_CASTEiJ_G0032543
protein coding gene Chr8:31703078-31708756 (-)
CBA/J MGP_CBAJ_G0033194
protein coding gene Chr8:34753569-34759218 (-)
DBA/2J MGP_DBA2J_G0033347
protein coding gene Chr8:30949866-30955354 (-)
FVB/NJ MGP_FVBNJ_G0033292
protein coding gene Chr8:30613662-30619231 (-)
LP/J MGP_LPJ_G0033437
protein coding gene Chr8:32169236-32174898 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033334
protein coding gene Chr8:34282838-34289965 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034039
protein coding gene Chr8:32029535-32035193 (-)
PWK/PhJ MGP_PWKPhJ_G0032255
protein coding gene Chr8:30466248-30472028 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032086
protein coding gene Chr8:31295202-31300943 (-)
WSB/EiJ MGP_WSBEiJ_G0032659
protein coding gene Chr8:32162535-32169765 (-)



Homology
more
  • Human Ortholog
    SMIM18, small integral membrane protein 18
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SMIM18, small integral membrane protein 18
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 100507341
    neXtProt AC: NX_P0DKX4
    UniProt: P0DKX4

  • Chr Location
    chr8:30637771-30645956 (+)  GRCh38.p7

Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094500 Ensembl Gene Model | MGI Sequence Detail 5659 C57BL/6J ±  kb
transcript ENSMUST00000179364 Ensembl | MGI Sequence Detail 587 Not Applicable  
polypeptide ENSMUSP00000136891 Ensembl | MGI Sequence Detail 93 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR031671 Protein of unknown function DUF4713
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2142621
References
more
  • Summaries
    All 13
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/30/2020
MGI 6.15
The Jackson Laboratory