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Hoxaas3 Gene Detail
Summary
  • Symbol
    Hoxaas3
  • Name
    Hoxa cluster antisense RNA 3
  • Synonyms
    2700086A05Rik
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:1919878
    NCBI Gene: 72628
Location & Maps
more
  • Sequence Map
    Chr6:52175217-52215076 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      39860 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 25.40 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    HOXA-AS3, HOXA cluster antisense RNA 3
  • Human Ortholog
    HOXA-AS3, HOXA cluster antisense RNA 3
    Orthology source: HGNC
  • Synonyms
    HOXA6as
  • Links
    NCBI Gene ID: 100133311

  • Chr Location
    7p15.2; chr7:27140364-27155928 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    17
  • Gene trapped
    16
  • Targeted
    1
  • Genomic Mutations
    1 involving Hoxaas3
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018869 VEGA Gene Model | MGI Sequence Detail 39860 C57BL/6J ±  kb
transcript NR_015611 RefSeq | MGI Sequence Detail 835 C57BL/6  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    131 from dbSNP Build 142
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5
References
more
  • Summaries
    All 13
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory