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Spats2 Gene Detail
Summary
  • Symbol
    Spats2
  • Name
    spermatogenesis associated, serine-rich 2
  • Synonyms
    2700012F11Rik, 59kDa, p59scr, Scr59
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919822
    NCBI Gene: 72572
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:99125926-99213215 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 56.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    410 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919822
protein coding gene Chr15:99125916-99213215 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022324
protein coding gene Chr15:100938362-101024799 (+)
A/J MGP_AJ_G0022282
protein coding gene Chr15:96928645-97017128 (+)
AKR/J MGP_AKRJ_G0022258
protein coding gene Chr15:99912646-100008439 (+)
BALB/cJ MGP_BALBcJ_G0022288
protein coding gene Chr15:97119808-97207427 (+)
C3H/HeJ MGP_C3HHeJ_G0022056
protein coding gene Chr15:99969315-100062085 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022733
protein coding gene Chr15:104691756-104785281 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020259
protein coding gene Chr15:92838339-92916997 (+)
CAST/EiJ MGP_CASTEiJ_G0021580
protein coding gene Chr15:100834787-100921132 (+)
CBA/J MGP_CBAJ_G0022025
protein coding gene Chr15:108253780-108362241 (+)
DBA/2J MGP_DBA2J_G0022152
protein coding gene Chr15:96377896-96461504 (+)
FVB/NJ MGP_FVBNJ_G0022132
protein coding gene Chr15:95357968-95442915 (+)
LP/J MGP_LPJ_G0022223
protein coding gene Chr15:101071041-101169868 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022152
protein coding gene Chr15:112210761-112306201 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022748
protein coding gene Chr15:100008204-100096116 (+)
PWK/PhJ MGP_PWKPhJ_G0021319
protein coding gene Chr15:96504834-96590580 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021154
protein coding gene Chr15:99864238-99956732 (+)
WSB/EiJ MGP_WSBEiJ_G0021631
protein coding gene Chr15:100541914-100629599 (+)



Homology
more
  • Human Ortholog
    SPATS2, spermatogenesis associated serine rich 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SPATS2, spermatogenesis associated serine rich 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Nbla00526, P59SCR, SCR59, SPATA10
  • Links
    NCBI Gene ID: 65244
    neXtProt AC: NX_Q86XZ4
    UniProt: Q86XZ4

  • Chr Location
    12q13.12; chr12:49366905-49527441 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11314
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SPATS2
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    29 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72572 NCBI Gene Model | MGI Sequence Detail 87290 C57BL/6J ±  kb
transcript NM_139140 RefSeq | MGI Sequence Detail 2075 Not Specified  
polypeptide Q8K1N4 UniProt | EBI | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 137
    cDNA 137

    Microarray probesets 3
References
more
  • Summaries
    All 53
    Diseases 1
    Gene Ontology 4
    Phenotypes 29
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory