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Htatsf1 Gene Detail
Summary
  • Symbol
    Htatsf1
  • Name
    HIV TAT specific factor 1
  • Synonyms
    1600023H17Rik, 2600017A12Rik, 2700077B20Rik, TAT-SF1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919709
    NCBI Gene: 72459
  • Gene Overview
    MyGene.info: HTATSF1
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:57053583-57067183 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 30.81 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    44 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919709
protein coding gene ChrX:57053570-57067183 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035744
protein coding gene ChrX:52370811-52384411 (+)
A/J MGP_AJ_G0035727
protein coding gene ChrX:52567986-52583118 (+)
AKR/J MGP_AKRJ_G0035647
protein coding gene ChrX:53963107-53976688 (+)
BALB/cJ MGP_BALBcJ_G0035714
protein coding gene ChrX:52019500-52033100 (+)
C3H/HeJ MGP_C3HHeJ_G0035416
protein coding gene ChrX:52897138-52910738 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036243
protein coding gene ChrX:53755515-53769115 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033094
protein coding gene ChrX:51975457-51989168 (+)
CAST/EiJ MGP_CASTEiJ_G0034709
protein coding gene ChrX:38797919-38811485 (+)
CBA/J MGP_CBAJ_G0035391
protein coding gene ChrX:55333242-55346842 (+)
DBA/2J MGP_DBA2J_G0035545
protein coding gene ChrX:52145953-52159553 (+)
FVB/NJ MGP_FVBNJ_G0035495
protein coding gene ChrX:51743387-51756988 (+)
LP/J MGP_LPJ_G0035633
protein coding gene ChrX:52955244-52968844 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035531
protein coding gene ChrX:56869769-56883370 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036259
protein coding gene ChrX:52403432-52417032 (+)
PWK/PhJ MGP_PWKPhJ_G0034405
protein coding gene ChrX:37067700-37081371 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034249
protein coding gene ChrX:39530552-39544315 (+)
WSB/EiJ MGP_WSBEiJ_G0034852
protein coding gene ChrX:51932137-51945746 (+)



Homology
more
  • Human Ortholog
    HTATSF1, HIV-1 Tat specific factor 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HTATSF1, HIV-1 Tat specific factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ196E23.2, TATSF1, TAT-SF1
  • Links
    NCBI Gene ID: 27336
    neXtProt AC: NX_O43719
    UniProt: O43719

  • Chr Location
    Xq26.3; chrX:136496932-136512346 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000067873 Ensembl Gene Model | MGI Sequence Detail 13601 C57BL/6J ±  kb
transcript ENSMUST00000088652 Ensembl | MGI Sequence Detail 2810 Not Applicable  
polypeptide ENSMUSP00000086027 Ensembl | MGI Sequence Detail 757 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 99
    cDNA 98
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1922893, MGI:1923845
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory