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Ccdc71 Gene Detail
Summary
  • Symbol
    Ccdc71
  • Name
    coiled-coil domain containing 71
  • Synonyms
    2600016J21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919704
    NCBI Gene: 72454
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108460527-108465938 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    40 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919704
protein coding gene Chr9:108452502-108465946 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035299
protein coding gene Chr9:110419176-110424590 (+)
A/J MGP_AJ_G0035278
protein coding gene Chr9:106372638-106378049 (+)
AKR/J MGP_AKRJ_G0035210
protein coding gene Chr9:109031148-109036559 (+)
BALB/cJ MGP_BALBcJ_G0035272
protein coding gene Chr9:106069895-106075306 (+)
C3H/HeJ MGP_C3HHeJ_G0034982
protein coding gene Chr9:109422073-109427484 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035792
protein coding gene Chr9:113435363-113440774 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032690
protein coding gene Chr9:103801921-103807236 (+)
CAST/EiJ MGP_CASTEiJ_G0034293
protein coding gene Chr9:109397225-109402685 (+)
CBA/J MGP_CBAJ_G0034950
protein coding gene Chr9:117421813-117427241 (+)
DBA/2J MGP_DBA2J_G0035111
protein coding gene Chr9:105826595-105832006 (+)
FVB/NJ MGP_FVBNJ_G0035059
protein coding gene Chr9:104592855-104598266 (+)
LP/J MGP_LPJ_G0035187
protein coding gene Chr9:110613810-110619228 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035098
protein coding gene Chr9:119004454-119009865 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035813
protein coding gene Chr9:109318222-109323633 (+)
PWK/PhJ MGP_PWKPhJ_G0034000
protein coding gene Chr9:106156881-106162431 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033835
protein coding gene Chr9:109375874-109381367 (+)
WSB/EiJ MGP_WSBEiJ_G0034414
protein coding gene Chr9:109204416-109209827 (+)



Homology
more
  • Human Ortholog
    CCDC71, coiled-coil domain containing 71
  • Vertebrate Orthologs
    6
  • Human Ortholog
    CCDC71, coiled-coil domain containing 71
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 64925
    neXtProt AC: NX_Q8IV32
    UniProt: Q8IV32

  • Chr Location
    3p21.31; chr3:49162535-49166352 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049305 Ensembl Gene Model | MGI Sequence Detail 5412 C57BL/6J ±  kb
transcript ENSMUST00000061209 Ensembl | MGI Sequence Detail 3092 Not Applicable  
polypeptide ENSMUSP00000057891 Ensembl | MGI Sequence Detail 433 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 4
References
more
  • Summaries
    All 25
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory