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Ttc30b Gene Detail
Summary
  • Symbol
    Ttc30b
  • Name
    tetratricopeptide repeat domain 30B
  • Synonyms
    2510042P03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919671
    NCBI Gene: 72421
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:75935849-75938462 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 44.79 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919671
protein coding gene Chr2:75935849-75938585 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0025837
protein coding gene Chr2:73330247-73332765 (-)
AKR/J MGP_AKRJ_G0025805
protein coding gene Chr2:75308768-75313642 (-)
BALB/cJ MGP_BALBcJ_G0025832
protein coding gene Chr2:73517636-73525510 (-)
C3H/HeJ MGP_C3HHeJ_G0025591
protein coding gene Chr2:75521901-75526408 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026278
protein coding gene Chr2:78585950-78587801 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023681
protein coding gene Chr2:70749176-70751879 (-)
CAST/EiJ MGP_CASTEiJ_G0025055
protein coding gene Chr2:75842562-75846941 (-)
CBA/J MGP_CBAJ_G0025572
protein coding gene Chr2:81473260-81479530 (-)
DBA/2J MGP_DBA2J_G0025703
protein coding gene Chr2:72925920-72929801 (-)
FVB/NJ MGP_FVBNJ_G0025666
protein coding gene Chr2:72351955-72354086 (-)
LP/J MGP_LPJ_G0025791
protein coding gene Chr2:76178764-76184788 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025696
protein coding gene Chr2:83347075-83349811 (-)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0024796
protein coding gene Chr2:72887567-72889852 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0025123
protein coding gene Chr2:75897733-75900976 (-)



Homology
more
  • Human Ortholog
    TTC30B, tetratricopeptide repeat domain 30B
  • Vertebrate Orthologs
    12
  • Human Ortholog
    TTC30B, tetratricopeptide repeat domain 30B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    fleer, IFT70, IFT70B
  • Links
    NCBI Gene ID: 150737
    neXtProt AC: NX_Q8N4P2
    UniProt: Q8N4P2

  • Chr Location
    2q31.2; chr2:177550152-177552796 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 71716
    1 human;1 mouse;1 rat;1 chimpanzee;2 cattle;2 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TTC30B
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 72421 NCBI Gene Model | MGI Sequence Detail 2614 C57BL/6J ±  kb
transcript NM_028235 RefSeq | MGI Sequence Detail 2634 Not Specified  
polypeptide Q9CY00 UniProt | EBI | MGI Sequence Detail 664 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
    IPR013026 Tetratricopeptide repeat-containing domain
    IPR039941 Tetratricopeptide repeat protein 30
Molecular
Reagents
less
  • All nucleic 22
    cDNA 22

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory