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Cdpf1 Gene Detail
Summary
  • Symbol
    Cdpf1
  • Name
    cysteine rich, DPF motif domain containing 1
  • Synonyms
    2210021J22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919605
    NCBI Gene: 72355
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:85806972-85811697 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 40.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919605
 protein coding gene Chr15:85806972-85811697 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022195
 protein coding gene Chr15:86717176-86721867 (-)
A/J MGP_AJ_G0022154
 protein coding gene Chr15:83475431-83480157 (-)
AKR/J MGP_AKRJ_G0022129
 protein coding gene Chr15:85943364-85948090 (-)
BALB/cJ MGP_BALBcJ_G0022160
 protein coding gene Chr15:83600915-83605728 (-)
C3H/HeJ MGP_C3HHeJ_G0021930
 protein coding gene Chr15:85881311-85888279 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022605
 protein coding gene Chr15:89960544-89965269 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020130
 protein coding gene Chr15:79794366-79799086 (-)
CAST/EiJ MGP_CASTEiJ_G0021452
 protein coding gene Chr15:86691440-86696095 (-)
CBA/J MGP_CBAJ_G0021897
 protein coding gene Chr15:92961580-92966306 (-)
DBA/2J MGP_DBA2J_G0022024
 protein coding gene Chr15:82937124-82941931 (-)
FVB/NJ MGP_FVBNJ_G0022003
 protein coding gene Chr15:82015633-82020466 (-)
LP/J MGP_LPJ_G0022095
 protein coding gene Chr15:86881430-86886190 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022023
 protein coding gene Chr15:97622272-97626929 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022620
 protein coding gene Chr15:85942264-85947148 (-)
PWK/PhJ MGP_PWKPhJ_G0021193
 protein coding gene Chr15:82952907-82958261 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021027
 protein coding gene Chr15:85653561-85658300 (-)
WSB/EiJ MGP_WSBEiJ_G0021501
 protein coding gene Chr15:86439161-86444593 (-)



Homology
more
  • Human Ortholog
    CDPF1, cysteine rich DPF motif domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CDPF1, cysteine rich DPF motif domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C22orf40
  • Links
    NCBI Gene ID: 150383
    neXtProt AC: NX_Q6NVV7
    UniProt: Q6NVV7

  • Chr Location
    22q13.31; chr22:46244013-46250679 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 45673
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDPF1
  • Gene Tree
    Cdpf1
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Cdpf1
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    30
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72355 NCBI Gene Model | MGI Sequence Detail 4726 C57BL/6J ±  kb
transcript NM_001164625 RefSeq | MGI Sequence Detail 1070 C57BL/6  
polypeptide Q8R3A2 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000032790 cysteine-rich DPF motif domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR018785 Cysteine-rich domain, DPF-motif
    IPR042426 Cysteine-rich DPF motif domain-containing protein 1
Molecular
Reagents
less
  • All nucleic 30
    cDNA 30

    Microarray probesets 3
References
more
  • Summaries
    All 43
    Diseases 1
    Phenotypes 25
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
01/19/2021
MGI 6.16 		The Jackson Laboratory