Cdpf1 Gene Detail

Summary

• Symbol
  Cdpf1
• Name
  cysteine rich, DPF motif domain containing 1
• Synonyms
  2210021J22Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1919605
  NCBI Gene: 72355
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:85806972-85811697 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 40.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919605	protein coding gene	Chr15:85806972-85811697 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022195	protein coding gene	Chr15:86717176-86721867 (-)
A/J	MGP_AJ_G0022154	protein coding gene	Chr15:83475431-83480157 (-)
AKR/J	MGP_AKRJ_G0022129	protein coding gene	Chr15:85943364-85948090 (-)
BALB/cJ	MGP_BALBcJ_G0022160	protein coding gene	Chr15:83600915-83605728 (-)
C3H/HeJ	MGP_C3HHeJ_G0021930	protein coding gene	Chr15:85881311-85888279 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022605	protein coding gene	Chr15:89960544-89965269 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020130	protein coding gene	Chr15:79794366-79799086 (-)
CAST/EiJ	MGP_CASTEiJ_G0021452	protein coding gene	Chr15:86691440-86696095 (-)
CBA/J	MGP_CBAJ_G0021897	protein coding gene	Chr15:92961580-92966306 (-)
DBA/2J	MGP_DBA2J_G0022024	protein coding gene	Chr15:82937124-82941931 (-)
FVB/NJ	MGP_FVBNJ_G0022003	protein coding gene	Chr15:82015633-82020466 (-)
LP/J	MGP_LPJ_G0022095	protein coding gene	Chr15:86881430-86886190 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022023	protein coding gene	Chr15:97622272-97626929 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022620	protein coding gene	Chr15:85942264-85947148 (-)
PWK/PhJ	MGP_PWKPhJ_G0021193	protein coding gene	Chr15:82952907-82958261 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021027	protein coding gene	Chr15:85653561-85658300 (-)
WSB/EiJ	MGP_WSBEiJ_G0021501	protein coding gene	Chr15:86439161-86444593 (-)

Homology

• Human Ortholog
  CDPF1, cysteine rich DPF motif domain containing 1

• Vertebrate Orthologs
  9

• Human Ortholog
  CDPF1, cysteine rich DPF motif domain containing 1
  Orthology source: HomoloGene, HGNC
• Synonyms
  C22orf40
• Links
  HGNC:33710

  NCBI Gene ID: 150383

  neXtProt AC: NX_Q6NVV7

  UniProt: Q6NVV7

  
  
• Chr Location
  22q13.31; chr22:46244013-46250679 (-)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 45673
  1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: CDPF1
• Gene Tree
  Cdpf1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  24 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (other)
  1
• Gene trapped
  3
• Radiation induced
  2
• Targeted
  3
• Genomic Mutations
  3 involving Cdpf1
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  30

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase cdpf1

Interactions

• Cdpf1 interacts with 36 markers (Mir96, Mir122, Mir139, ...) View All

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  10
• UniProt
  3
• CCDS
  CCDS27722.1
• UniGene
  33706

• Ensembl
  ENSMUSG00000064284 (Evidence)
• NCBI Gene
  72355

Representative Sequences			Length	Strain/Species
genomic	72355	NCBI Gene Model | MGI Sequence Detail	4726	C57BL/6J
transcript	NM_001164625	RefSeq | MGI Sequence Detail	1070	C57BL/6
polypeptide	Q8R3A2	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000032790 cysteine-rich DPF motif domain-containing protein 1
  (term hierarchy)
• InterPro Domains
  IPR018785 Cysteine-rich domain, DPF-motif
  IPR042426 Cysteine-rich DPF motif domain-containing protein 1

Molecular
Reagents

• All nucleic 30

  cDNA 30

  
  

  Microarray probesets 3

References

• Summaries
  All 42

  Diseases 1

  Phenotypes 24
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

TSS for Cdpf1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135768	Chr15:85811663-85811705 (-)	13 bp
Tssr135767	Chr15:85811617-85811628 (-)	74 bp
Tssr135766	Chr15:85811239-85811248 (-)	453 bp