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Cdpf1 Gene Detail
Summary
  • Symbol
    Cdpf1
  • Name
    cysteine rich, DPF motif domain containing 1
  • Synonyms
    2210021J22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919605
    NCBI Gene: 72355
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:85806972-85811697 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 40.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919605
protein coding gene Chr15:85806972-85811697 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022195
protein coding gene Chr15:86717176-86721867 (-)
A/J MGP_AJ_G0022154
protein coding gene Chr15:83475431-83480157 (-)
AKR/J MGP_AKRJ_G0022129
protein coding gene Chr15:85943364-85948090 (-)
BALB/cJ MGP_BALBcJ_G0022160
protein coding gene Chr15:83600915-83605728 (-)
C3H/HeJ MGP_C3HHeJ_G0021930
protein coding gene Chr15:85881311-85888279 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022605
protein coding gene Chr15:89960544-89965269 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020130
protein coding gene Chr15:79794366-79799086 (-)
CAST/EiJ MGP_CASTEiJ_G0021452
protein coding gene Chr15:86691440-86696095 (-)
CBA/J MGP_CBAJ_G0021897
protein coding gene Chr15:92961580-92966306 (-)
DBA/2J MGP_DBA2J_G0022024
protein coding gene Chr15:82937124-82941931 (-)
FVB/NJ MGP_FVBNJ_G0022003
protein coding gene Chr15:82015633-82020466 (-)
LP/J MGP_LPJ_G0022095
protein coding gene Chr15:86881430-86886190 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022023
protein coding gene Chr15:97622272-97626929 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022620
protein coding gene Chr15:85942264-85947148 (-)
PWK/PhJ MGP_PWKPhJ_G0021193
protein coding gene Chr15:82952907-82958261 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021027
protein coding gene Chr15:85653561-85658300 (-)
WSB/EiJ MGP_WSBEiJ_G0021501
protein coding gene Chr15:86439161-86444593 (-)



Homology
more
  • Human Ortholog
    CDPF1, cysteine rich DPF motif domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CDPF1, cysteine rich DPF motif domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C22orf40
  • Links
    NCBI Gene ID: 150383
    neXtProt AC: NX_Q6NVV7
    UniProt: Q6NVV7

  • Chr Location
    22q13.31; chr22:46244013-46250679 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 45673
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDPF1
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    3
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Cdpf1
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72355 NCBI Gene Model | MGI Sequence Detail 4726 C57BL/6J ±  kb
transcript NM_001164625 RefSeq | MGI Sequence Detail 1070 C57BL/6  
polypeptide Q8R3A2 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000032790 cysteine-rich DPF motif domain-containing protein 1
  • InterPro Domains
    IPR018785 Cysteine-rich domain, DPF-motif
    IPR042426 Cysteine-rich DPF motif domain-containing protein 1
Molecular
Reagents
less
  • All nucleic 30
    cDNA 30

    Microarray probesets 3
References
more
  • Summaries
    All 42
    Diseases 1
    Phenotypes 24
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory