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Ttc4
Gene Detail
Symbol

Name
ID
Ttc4
tetratricopeptide repeat domain 4
MGI:1919604
Synonyms
2810002P21Rik, L62
Feature Type
protein coding gene
Genetic Map
Chromosome 4
49.68 cM, cytoband C7
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:106662256-106678944 bp, - strand
From VEGA annotation of GRCm38

  16689 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31249  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TTC4
Gene Tree: Ttc4

Human
homologs
TTC4, tetratricopeptide repeat domain 4
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 7268
neXtProt AC: NX_O95801

Human Chr (Location): 1p32.3; chr1:54715822-54742657 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(6) Targeted(1)
Genomic Mutations involving Ttc4 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ttc4 interacts with 163 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (83)    Tissues (10)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 83
cDNA source data(93)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ttc4 ; ZFIN ttc4    NEW 
Molecular
reagents
All nucleic(94) cDNA(94)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000008164 (Evidence)
Ensembl Gene Model ENSMUSG00000025413 (Evidence)
Entrez Gene 72354 (Evidence)
UniGene 25806
DFCI TC1766620, TC1574646
DoTS DT.94299752, DT.488991, DT.97354161
NIA Mouse Gene Index U025330
Consensus CDS Project CCDS18424.1
International Mouse Phenotyping Consortium Status Ttc4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008164 VEGA Gene Model | MGI Sequence Detail 16689 C57BL/6J ±  kb
transcript OTTMUST00000018529 VEGA | MGI Sequence Detail 2121 Not Applicable 
polypeptide OTTMUSP00000008507 VEGA | MGI Sequence Detail 386 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(10) UniProt(7)
Polymorphisms
SNPs within 2kb(100 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011990 Tetratricopeptide-like helical
InterPro IPR019734 Tetratricopeptide repeat
InterPro IPR013026 Tetratricopeptide repeat-containing domain
Protein Ontology PR:000029839 tetratricopeptide repeat protein 4
References
(Earliest) J:47962 Jurecic R, et al., Identification and cloning of differentially expressed genes by long-distance differential display. Anal Biochem. 1998 Jun 1;259(2):235-44
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)
Other
accession IDs
MGI:1354750

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory