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Ttc4
Gene Detail
Symbol

Name
ID
Ttc4
tetratricopeptide repeat domain 4
MGI:1919604
Synonyms
2810002P21Rik, L62
Feature Type
protein coding gene
Genetic Map
Chromosome 4
49.68 cM, cytoband C7
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:106662256-106678944 bp, - strand
From VEGA annotation of GRCm38

  16689 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31249  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ttc4

Human
homologs
Human Homolog TTC4, tetratricopeptide repeat domain 4
NCBI Gene ID 7268
neXtProt AC  NX_O95801
Human Chr (Location)  1p32.3; chr1:54715822-54742657 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(6)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ttc4 interacts with 164 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (83)    Tissues (10)    Images (25)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 83
cDNA source data(93)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(94) cDNA(94)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000008164 (Evidence)
Ensembl Gene ModelENSMUSG00000025413 (Evidence)
Entrez Gene72354 (Evidence)
UniGene25806
DFCITC1766620, TC1574646
DoTSDT.94299752, DT.488991, DT.97354161
NIA Mouse Gene IndexU025330
Consensus CDS ProjectCCDS18424.1
International Mouse Knockout Project StatusTtc4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008164 VEGA Gene Model | MGI Sequence Detail 16689 C57BL/6J ±  kb
transcript OTTMUST00000018529 VEGA | MGI Sequence Detail 2121 Not Applicable 
polypeptide OTTMUSP00000008507 VEGA | MGI Sequence Detail 386 Not Applicable 

For the selected sequences
All sequences(69) RefSeq(10) UniProt(13)
Polymorphisms
SNPs within 2kb(100 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011990 Tetratricopeptide-like helical
InterPro IPR019734 Tetratricopeptide repeat
InterPro IPR013026 Tetratricopeptide repeat-containing domain
Protein Ontology PR:000029839 tetratricopeptide repeat protein 4
References
(Earliest) J:47962 Jurecic R, et al., Identification and cloning of differentially expressed genes by long-distance differential display. Anal Biochem. 1998 Jun 1;259(2):235-44
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)
Other
accession IDs
MGI:1354750

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory