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Ttc4 Gene Detail
Summary
  • Symbol
    Ttc4
  • Name
    tetratricopeptide repeat domain 4
  • Synonyms
    2810002P21Rik, L62
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919604
    NCBI Gene: 72354
  • Gene Overview
    MyGene.info: TTC4
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:106662256-106678944 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 49.68 cM, cytoband C7
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919604
protein coding gene Chr4:106658202-106678969 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028524
protein coding gene Chr4:107299643-107316333 (-)
A/J MGP_AJ_G0028487
protein coding gene Chr4:103467428-103484118 (-)
AKR/J MGP_AKRJ_G0028434
protein coding gene Chr4:105980771-105997457 (-)
BALB/cJ MGP_BALBcJ_G0028506
protein coding gene Chr4:103655333-103672060 (-)
C3H/HeJ MGP_C3HHeJ_G0028220
protein coding gene Chr4:106734494-106751221 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028946
protein coding gene Chr4:111171534-111188222 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026237
protein coding gene Chr4:98744224-98760979 (-)
CAST/EiJ MGP_CASTEiJ_G0027656
protein coding gene Chr4:104534392-104551414 (-)
CBA/J MGP_CBAJ_G0028189
protein coding gene Chr4:114758807-114775534 (-)
DBA/2J MGP_DBA2J_G0028337
protein coding gene Chr4:103084392-103101068 (-)
FVB/NJ MGP_FVBNJ_G0028305
protein coding gene Chr4:101940140-101957560 (-)
LP/J MGP_LPJ_G0028438
protein coding gene Chr4:107499826-107516516 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028331
protein coding gene Chr4:120083083-120099810 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028982
protein coding gene Chr4:106229762-106246439 (-)
PWK/PhJ MGP_PWKPhJ_G0027382
protein coding gene Chr4:101320274-101337338 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027206
protein coding gene Chr4:103611594-103628549 (-)
WSB/EiJ MGP_WSBEiJ_G0027737
protein coding gene Chr4:106401401-106421066 (-)



Homology
more
  • Human Ortholog
    TTC4, tetratricopeptide repeat domain 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TTC4, tetratricopeptide repeat domain 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CNS1
  • Links
    NCBI Gene ID: 7268
    neXtProt AC: NX_O95801
    UniProt: O95801

  • Chr Location
    1p32.3; chr1:54715822-54742657 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 31249
    1 human;1 mouse;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TTC4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025413 Ensembl Gene Model | MGI Sequence Detail 16689 C57BL/6J ±  kb
transcript ENSMUST00000026480 Ensembl | MGI Sequence Detail 2121 Not Applicable  
polypeptide ENSMUSP00000026480 Ensembl | MGI Sequence Detail 386 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 95
    cDNA 95

    Microarray probesets 4
Other
Accession IDs
less
MGI:1354750
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Phenotypes 9
  • Earliest
    J:47962 Jurecic R, et al., Identification and cloning of differentially expressed genes by long-distance differential display. Anal Biochem. 1998 Jun 1;259(2):235-44
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory