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Lsm12
Gene Detail
Symbol

Name
ID
Lsm12
LSM12 homolog (S. cerevisiae)
MGI:1919592
Synonyms
1110032E16Rik, 2600001B17Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
65.60 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:102162497-102185296 bp, - strand
From VEGA annotation of GRCm38

  22800 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6114  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

HCOP human homology predictions: LSM12
Gene Tree: Lsm12

Human
homologs
LSM12, LSM12 homolog
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 124801
neXtProt AC: NX_Q3MHD2

Human Synonyms: PNAS-135

Human Chr (Location): 17q21.31; chr17:44034635-44067619 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(7) Targeted(3)
Genomic Mutations involving Lsm12 (1)
Incidental mutations (data from APF )
Interactions
Lsm12 interacts with 247 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(29)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase lsm12 ; ZFIN lsm12b    NEW 
Molecular
reagents
All nucleic(29) cDNA(29)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000002494 (Evidence)
Ensembl Gene Model ENSMUSG00000020922 (Evidence)
Entrez Gene 268490 (Evidence)
UniGene 259079
DFCI TC1581189, TC1599431, TC1667133, TC1750909, TC1778773
DoTS DT.488165, DT.94369429, DT.97369165, DT.97401278
NIA Mouse Gene Index U033469, U115425
Consensus CDS Project CCDS25490.1
International Mouse Phenotyping Consortium Status Lsm12
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000002494 VEGA Gene Model | MGI Sequence Detail 22800 C57BL/6J ±  kb
transcript OTTMUST00000004879 VEGA | MGI Sequence Detail 2256 Not Applicable 
polypeptide OTTMUSP00000002345 VEGA | MGI Sequence Detail 195 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(139 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019181 Anticodon-binding domain
Protein Ontology PR:000009957 protein LSM12
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)
Other
accession IDs
MGI:1915991

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory