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1600014C10Rik
Gene Detail
Symbol

Name
ID
1600014C10Rik
RIKEN cDNA 1600014C10 gene
MGI:1919494
Feature Type
protein coding gene
Genetic Map
Chromosome 7
25.36 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:38183217-38197568 bp, + strand
From VEGA annotation of GRCm38

  14352 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41744  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 3 chicken; 1 western clawed frog; 3 zebrafish

HCOP human homology predictions: C19orf12
Gene Tree: 1600014C10Rik

Human
homologs
C19orf12, chromosome 19 open reading frame 12
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 83636
neXtProt AC: NX_Q9NSK7

Human Synonyms: NBIA3, NBIA4, SPG43

Human Chr (Location): 19q12; chr19:29698886-29715789 (-)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human C19orf12

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(4) Targeted(1)
Incidental mutations (data from CvDC )
Interactions
1600014C10Rik interacts with 263 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process biological_process
Component endoplasmic reticulum, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(106)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN zgc:101715, zgc:112052    NEW 
Molecular
reagents
All nucleic(106) cDNA(106)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000042336 (Evidence)
Ensembl Gene Model ENSMUSG00000054676 (Evidence)
Entrez Gene 72244 (Evidence)
UniGene 187554
DFCI TC1575436, TC1588909, TC1622138, TC1735431
DoTS DT.94354606, DT.101721371, DT.493279
NIA Mouse Gene Index U074786
International Mouse Phenotyping Consortium Status 1600014C10Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000042336 VEGA Gene Model | MGI Sequence Detail 14352 C57BL/6J ±  kb
transcript OTTMUST00000111538 VEGA | MGI Sequence Detail 403 Not Applicable 
polypeptide OTTMUSP00000062470 VEGA | MGI Sequence Detail 55 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(390 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:2141949

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory