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1700021F07Rik Gene Detail
Summary
  • Symbol
    1700021F07Rik
  • Name
    RIKEN cDNA 1700021F07 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919471
    NCBI Gene: 72221
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:173522592-173528502 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 96.88 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919471
protein coding gene Chr2:173522586-173528502 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026957
protein coding gene Chr2:179816369-179823378 (+)
A/J MGP_AJ_G0026924
protein coding gene Chr2:172245570-172252120 (+)
AKR/J MGP_AKRJ_G0026895
protein coding gene Chr2:177438187-177443966 (+)
BALB/cJ MGP_BALBcJ_G0026933
protein coding gene Chr2:172648440-172654939 (+)
C3H/HeJ MGP_C3HHeJ_G0026675
protein coding gene Chr2:177825765-177832561 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027380
protein coding gene Chr2:184977260-184983001 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024750
protein coding gene Chr2:165475630-165481463 (+)
CAST/EiJ MGP_CASTEiJ_G0026133
protein coding gene Chr2:178536820-178544458 (+)
CBA/J MGP_CBAJ_G0026652
protein coding gene Chr2:191900372-191907574 (+)
DBA/2J MGP_DBA2J_G0026790
protein coding gene Chr2:171337089-171342962 (+)
FVB/NJ MGP_FVBNJ_G0026756
protein coding gene Chr2:169969804-169975563 (+)
LP/J MGP_LPJ_G0026891
protein coding gene Chr2:179737764-179744934 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026775
protein coding gene Chr2:194826746-194833074 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027437
protein coding gene Chr2:177458001-177463863 (+)
PWK/PhJ MGP_PWKPhJ_G0025870
protein coding gene Chr2:171144855-171152048 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025670
protein coding gene Chr2:176484258-176490189 (+)
WSB/EiJ MGP_WSBEiJ_G0026206
protein coding gene Chr2:178411267-178418252 (+)



Homology
more
  • Human Ortholog
    C20orf85, chromosome 20 open reading frame 85
  • Vertebrate Orthologs
    8
  • Human Ortholog
    C20orf85, chromosome 20 open reading frame 85
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA196N14.1, LLC1
  • Links
    NCBI Gene ID: 128602
    neXtProt AC: NX_Q9H1P6
    UniProt: Q9H1P6

  • Chr Location
    20q13.32; chr20:58150927-58161130 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72221 NCBI Gene Model | MGI Sequence Detail 5911 C57BL/6J ±  kb
transcript NM_028158 RefSeq | MGI Sequence Detail 641 Not Specified  
polypeptide Q9DA42 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR020339 Uncharacterised protein family C20orf85
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory