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1700016L21Rik Gene Detail
Summary
  • Symbol
    1700016L21Rik
  • Name
    RIKEN cDNA 1700016L21 gene
  • Synonyms
    DCKO, Jr3
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919458
    NCBI Gene: 72208
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:80445932-80475660 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    249 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919458
lncRNA gene Chr1:80445932-80479867 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004889
lincRNA gene Chr1:81266069-81302132 (+)
A/J MGP_AJ_G0004871
lincRNA gene Chr1:78401365-78436907 (+)
AKR/J MGP_AKRJ_G0004849
lincRNA gene Chr1:80547371-80581348 (+)
BALB/cJ MGP_BALBcJ_G0004852
lincRNA gene Chr1:78480592-78515346 (+)
C3H/HeJ MGP_C3HHeJ_G0004801
lincRNA gene Chr1:80894501-80928319 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005003
lincRNA gene Chr1:84425969-84463190 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004428
lincRNA gene Chr1:73709069-73745621 (+)
CAST/EiJ MGP_CASTEiJ_G0004753
lincRNA gene Chr1:80269708-80307827 (+)
CBA/J MGP_CBAJ_G0004794
lincRNA gene Chr1:87124027-87161117 (+)
DBA/2J MGP_DBA2J_G0004812
lincRNA gene Chr1:77701306-77736279 (+)
FVB/NJ MGP_FVBNJ_G0004831
lincRNA gene Chr1:76838235-76873291 (+)
LP/J MGP_LPJ_G0004890
lincRNA gene Chr1:82416905-82454098 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004816
lincRNA gene Chr1:90409569-90445262 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005007
lincRNA gene Chr1:80680627-80729533 (+)
PWK/PhJ MGP_PWKPhJ_G0004705
lincRNA gene Chr1:77127213-77162103 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004631
lincRNA gene Chr1:79932752-79972794 (+)
WSB/EiJ MGP_WSBEiJ_G0004798
lincRNA gene Chr1:80436639-80473757 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    42 phenotypes from 1 allele in 7 genetic backgrounds
    7 phenotypes from multigenic genotypes
    304 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
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    Representative SequencesLengthStrain/SpeciesFlank
    genomic 72208 NCBI Gene Model | MGI Sequence Detail 29729 C57BL/6J ±  kb
    transcript NR_040460 RefSeq | MGI Sequence Detail 394 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 2
      Primer pair 1
    Other
    Accession IDs
    less
    MGI:3057164
    References
    more
    • Summaries
      All 312
      Phenotypes 304
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:281954 McPherson SW, et al., The retinal environment induces microglia-like properties in recruited myeloid cells. J Neuroinflammation. 2019 Jul 20;16(1):151

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    03/03/2020
    MGI 6.15
    The Jackson Laboratory