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Pygo1 Gene Detail
Summary
  • Symbol
    Pygo1
  • Name
    pygopus 1
  • Synonyms
    2600014C22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919385
    NCBI Gene: 72135
  • Gene Overview
    MyGene.info: PYGO1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:72925650-72946015 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 40.08 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    51 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919385
protein coding gene Chr9:72925645-72952181 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035019
protein coding gene Chr9:73126737-73154383 (+)
A/J MGP_AJ_G0035000
protein coding gene Chr9:70570514-70597165 (+)
AKR/J MGP_AKRJ_G0034929
protein coding gene Chr9:72263873-72290403 (+)
BALB/cJ MGP_BALBcJ_G0034992
protein coding gene Chr9:70277778-70304306 (+)
C3H/HeJ MGP_C3HHeJ_G0034701
protein coding gene Chr9:72754677-72781200 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035511
protein coding gene Chr9:75051984-75078520 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032422
protein coding gene Chr9:70045012-70072298 (+)
CAST/EiJ MGP_CASTEiJ_G0034023
protein coding gene Chr9:73089706-73118686 (+)
CBA/J MGP_CBAJ_G0034674
protein coding gene Chr9:77671634-77698168 (+)
DBA/2J MGP_DBA2J_G0034833
protein coding gene Chr9:70287594-70314618 (+)
FVB/NJ MGP_FVBNJ_G0034775
protein coding gene Chr9:69596467-69622938 (+)
LP/J MGP_LPJ_G0034914
protein coding gene Chr9:73353893-73381194 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034816
protein coding gene Chr9:78750179-78776712 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035533
protein coding gene Chr9:72415463-72441995 (+)
PWK/PhJ MGP_PWKPhJ_G0033727
protein coding gene Chr9:70565268-70592840 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033560
protein coding gene Chr9:72705506-72733129 (+)
WSB/EiJ MGP_WSBEiJ_G0034135
protein coding gene Chr9:72349552-72377416 (+)



Homology
more
  • Human Ortholog
    PYGO1, pygopus family PHD finger 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PYGO1, pygopus family PHD finger 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 26108
    neXtProt AC: NX_Q9Y3Y4
    UniProt: Q9Y3Y4

  • Chr Location
    15q21.3; chr15:55538884-55588852 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41050
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PYGO1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    15 phenotypes from multigenic genotypes
    1 images
    10 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    6
  • Genomic Mutations
    1 involving Pygo1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Homozygous null mice are viable and show no obvious phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72135 NCBI Gene Model | MGI Sequence Detail 20366 C57BL/6J ±  kb
transcript NM_028116 RefSeq | MGI Sequence Detail 1745 C57BL/6  
polypeptide Q9D0P5 UniProt | EBI | MGI Sequence Detail 417 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 20
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 45
    Developmental Gene Expression 10
    Gene Ontology 9
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:245023 Cantu C, et al., A cytoplasmic role of Wnt/beta-catenin transcriptional cofactors Bcl9, Bcl9l, and Pygopus in tooth enamel formation. Sci Signal. 2017 Feb 07;10(465)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory