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Zbed3 Gene Detail
Summary
  • Symbol
    Zbed3
  • Name
    zinc finger, BED type containing 3
  • Synonyms
    0610037K01Rik, 2610005H11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919364
    NCBI Gene: 72114
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:95460120-95474349 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 49.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919364
protein coding gene Chr13:95460113-95474350 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020838
protein coding gene Chr13:96782691-96795222 (+)
A/J MGP_AJ_G0020792
protein coding gene Chr13:93155376-93167978 (+)
AKR/J MGP_AKRJ_G0020766
protein coding gene Chr13:95996684-96010590 (+)
BALB/cJ MGP_BALBcJ_G0020789
protein coding gene Chr13:93835887-93849209 (+)
C3H/HeJ MGP_C3HHeJ_G0020582
protein coding gene Chr13:95698658-95711661 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021225
protein coding gene Chr13:99725802-99738668 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018794
protein coding gene Chr13:88991233-89003983 (+)
CAST/EiJ MGP_CASTEiJ_G0020101
protein coding gene Chr13:94993624-95007954 (+)
CBA/J MGP_CBAJ_G0020541
protein coding gene Chr13:103681520-103696653 (+)
DBA/2J MGP_DBA2J_G0020666
protein coding gene Chr13:92940412-92953012 (+)
FVB/NJ MGP_FVBNJ_G0020647
protein coding gene Chr13:91726519-91739005 (+)
LP/J MGP_LPJ_G0020741
protein coding gene Chr13:96902847-96915779 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020675
protein coding gene Chr13:104129659-104142924 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021265
protein coding gene Chr13:95400727-95414827 (+)
PWK/PhJ MGP_PWKPhJ_G0019853
protein coding gene Chr13:91700634-91713922 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019677
protein coding gene Chr13:91689898-91702548 (+)
WSB/EiJ MGP_WSBEiJ_G0020158
protein coding gene Chr13:95901367-95913968 (+)



Homology
more
  • Human Ortholog
    ZBED2, zinc finger BED-type containing 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZBED2, zinc finger BED-type containing 2
  • Links
    NCBI Gene ID: 79413
    neXtProt AC: NX_Q9BTP6
    UniProt: Q9BTP6

  • Chr Location
    3q13.13; chr3:111592900-111595335 (-)  GRCh38.p7

  • Human Ortholog
    ZBED3, zinc finger BED-type containing 3
  • Links
    NCBI Gene ID: 84327
    neXtProt AC: NX_Q96IU2
    UniProt: Q96IU2

  • Chr Location
    5q13.3; chr5:77076707-77087205 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous knockout has a maternal effect in reduced litter size owing to cytoskeletal abnormalities affecting early zygote development.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000041995 Ensembl Gene Model | MGI Sequence Detail 14230 C57BL/6J ±  kb
    transcript ENSMUST00000221807 Ensembl | MGI Sequence Detail 1945 Not Applicable  
    polypeptide ENSMUSP00000152153 Ensembl | MGI Sequence Detail 228 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 16

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1915634, MGI:2145348, MGI:2145367
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 4
      Gene Ontology 5
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:284116 Qin D, et al., The subcortical maternal complex protein Nlrp4f is involved in cytoplasmic lattice formation and organelle distribution. Development. 2019 Oct 18;146(20)

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    10/12/2021
    MGI 6.17
    The Jackson Laboratory