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Phf10
Gene Detail
 Symbol
Name
ID
Phf10
PHD finger protein 10
MGI:1919307
BioType Conflict
Synonyms 1810055P05Rik, Baf45a
Feature Type protein coding gene
Genetic Map
Chromosome 17
8.95 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr17:14945009-14961273 bp, - strand
From VEGA annotation of GRCm38

  16265 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
Gene Tree: Phf10
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from APF )
Interactions
Phf10 interacts with 372 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process nervous system development, regulation of transcription, DNA-templated, ...
Component npBAF complex, nucleus
Function metal ion binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (58)    Tissues (58)    Images (5)
Theiler Stages: 2, 3, 4, 5, 17, 18, 21, 22, 23, 27, 28
Assay TypeResults
RNA in situ 50
RT-PCR 8
cDNA source data(6)
External Resources: Allen Institute   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(6) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000035228 (Evidence)
Ensembl Gene ModelENSMUSG00000023883 (Evidence)
Entrez Gene72057, 106740
DFCITC1579494, TC1600384
DoTSDT.50315128, DT.50316874
NIA Mouse Gene IndexU037445
Consensus CDS ProjectCCDS28407.2
International Mouse Knockout Project StatusPhf10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035228 VEGA Gene Model | MGI Sequence Detail 16265 C57BL/6J ±  kb
transcript OTTMUST00000089788 VEGA | MGI Sequence Detail 1663 Not Applicable 
polypeptide OTTMUSP00000062785 VEGA | MGI Sequence Detail 497 Not Applicable 

For the selected sequences
All sequences(31) UniProt(3)
Polymorphisms SNPs within 2kb(18 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000012637 PHD finger protein 10
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:197141 Tuoc TC, et al., Chromatin Regulation by BAF170 Controls Cerebral Cortical Size and Thickness. Dev Cell. 2013 May 13;25(3):256-69
All references(36)
Other
accession IDs
MGI:2147013

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory