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Phf10 Gene Detail
Summary
  • Symbol
    Phf10
  • Name
    PHD finger protein 10
  • Synonyms
    1810055P05Rik, Baf45a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919307
    NCBI Gene: 72057
  • Gene Overview
    MyGene.info: PHF10
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:14945009-14961273 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 8.95 cM, cytoband A2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919307
protein coding gene Chr17:14944994-14961638 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023168
protein coding gene Chr17:12774606-12790858 (-)
A/J MGP_AJ_G0023134
protein coding gene Chr17:12591298-12608613 (-)
AKR/J MGP_AKRJ_G0023104
protein coding gene Chr17:12498686-12516422 (-)
BALB/cJ MGP_BALBcJ_G0023136
protein coding gene Chr17:12420455-12436663 (-)
C3H/HeJ MGP_C3HHeJ_G0022897
protein coding gene Chr17:12678715-12694282 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023577
protein coding gene Chr17:13356715-13371233 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021089
protein coding gene Chr17:10612335-10628986 (-)
CAST/EiJ MGP_CASTEiJ_G0022412
protein coding gene Chr17:12621734-12637972 (-)
CBA/J MGP_CBAJ_G0022871
protein coding gene Chr17:13770166-13786560 (-)
DBA/2J MGP_DBA2J_G0023006
protein coding gene Chr17:12311302-12327510 (-)
FVB/NJ MGP_FVBNJ_G0022972
protein coding gene Chr17:12096886-12113207 (-)
LP/J MGP_LPJ_G0023078
protein coding gene Chr17:12747021-12763273 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022993
protein coding gene Chr17:13361360-13378865 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023613
protein coding gene Chr17:12727513-12801636 (-)
PWK/PhJ MGP_PWKPhJ_G0022160
protein coding gene Chr17:11730402-11749605 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021990
protein coding gene Chr17:11707239-11725550 (-)
WSB/EiJ MGP_WSBEiJ_G0022473
protein coding gene Chr17:13042524-13061294 (-)



Homology
more
  • Human Ortholog
    PHF10, PHD finger protein 10
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PHF10, PHD finger protein 10
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF45A, XAP135
  • Links
    NCBI Gene ID: 55274
    neXtProt AC: NX_Q8WUB8
    UniProt: Q8WUB8

  • Chr Location
    6q27; chr6:169703902-169724049 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10112
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PHF10
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Mice homozygous for a floxed allele are viable and fertile.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000023883 Ensembl Gene Model | MGI Sequence Detail 16265 C57BL/6J ±  kb
transcript ENSMUST00000024657 Ensembl | MGI Sequence Detail 1663 Not Applicable  
polypeptide ENSMUSP00000024657 Ensembl | MGI Sequence Detail 497 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2147013
References
more
  • Summaries
    All 35
    Developmental Gene Expression 7
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:235652 Bachmann C, et al., mSWI/SNF (BAF) Complexes Are Indispensable for the Neurogenesis and Development of Embryonic Olfactory Epithelium. PLoS Genet. 2016 Sep;12(9):e1006274

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory