About   Help   FAQ
Slc38a10
Gene Detail
Symbol

Name
ID
Slc38a10
solute carrier family 38, member 10
MGI:1919305
Synonyms
1810073N04Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 11
83.96 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:120103960-120151346 bp, - strand
From VEGA annotation of GRCm38

  47387 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41556  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Slc38a10

Human
homologs
Human Homolog SLC38A10, solute carrier family 38, member 10
NCBI Gene ID 124565
neXtProt AC  NX_Q9HBR0
Human Chr (Location)  17q25.3; chr17:81244811-81295433 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(4) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc38a10 interacts with 133 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process amino acid transmembrane transport, amino acid transport, ...
Component Golgi apparatus, integral component of membrane, ...
Function amino acid transmembrane transporter activity
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (238)    Tissues (100)    Images (50)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 238
cDNA source data(198)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(198) cDNA(198)
Microarray probesets(10)
Other database
links
VEGA Gene ModelOTTMUSG00000004103 (Evidence)
Ensembl Gene ModelENSMUSG00000061306 (Evidence)
Entrez Gene72055 (Evidence)
UniGene253403
DFCITC1573135, TC1589705, TC1744315, TC1586707, TC1726006, TC1590285, TC1619446
Consensus CDS ProjectCCDS25728.1, CCDS49000.1, CCDS49001.1, CCDS49002.1
International Mouse Knockout Project StatusSlc38a10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004103 VEGA Gene Model | MGI Sequence Detail 47387 C57BL/6J ±  kb
transcript OTTMUST00000009259 VEGA | MGI Sequence Detail 4578 Not Applicable 
polypeptide OTTMUSP00000004511 VEGA | MGI Sequence Detail 1090 Not Applicable 

For the selected sequences
All sequences(147) RefSeq(30) UniProt(9)
Polymorphisms
SNPs within 2kb(219 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane
Protein Ontology PR:000033430 sodium-coupled neutral amino acid transporter 10
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:213427 Adissu HA, et al., Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen. Dis Model Mech. 2014 May;7(5):515-24
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/16/2014
MGI 5.20
The Jackson Laboratory