Slc60a2-ps1 Pseudogene Detail

Summary

• Symbol
  Slc60a2-ps1
• Name
  solute carrier family 60 member 2, pseudogene 1
• Synonyms
  2010001E11Rik, Mfsd4b2, Mfsd4b2-ps

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1919295
  NCBI Gene: 72045
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:39796378-39802932 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.31 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919295	pseudogene	Chr10:39796376-39813309 (-)
129S1/SvImJ	ENSMUSG00200010073	pseudogene	Chr10:36651578-36668511 (-)
A/J	ENSMUSG00195017635	pseudogene	Chr10:36954290-36971226 (-)
AKR/J	ENSMUSG00220029542	pseudogene	Chr10:36630920-36647854 (-)
BALB/cJ	ENSMUSG00180016864	pseudogene	Chr10:37039560-37056494 (-)
C3H/HeJ	ENSMUSG00175012765	pseudogene	Chr10:36833884-36850818 (-)
C57BL/6NJ	ENSMUSG00215011482	pseudogene	Chr10:36584420-36601353 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015250	protein coding gene	Chr10:35414422-35421684 (-)
CAST/EiJ	ENSTCUG00005029094	pseudogene	Chr10:37037129-37055016 (-)
CBA/J	ENSMUSG00210025973	pseudogene	Chr10:36727348-36744282 (-)
DBA/2J	ENSMUSG00185008122	pseudogene	Chr10:36879911-36896844 (-)
FVB/NJ	ENSMUSG00205014125	pseudogene	Chr10:36794516-36811449 (-)
JF1/MsJ	ENSUMUG00000036363	pseudogene	Chr10:36650689-36668363 (-)
LP/J	ENSMUSG00230016042	pseudogene	Chr10:38640623-38657557 (-)
NOD/ShiLtJ	ENSMUSG00190034072	pseudogene	Chr10:37008244-37025177 (-)
NZO/HlLtJ	ENSMUSG00225017765	pseudogene	Chr10:42967468-42984401 (-)
PWK/PhJ	ENSLUMG00010008260	pseudogene	Chr10:36771416-36789180 (-)
SPRET/EiJ	ENSMSPG00010020981	pseudogene	Chr10:37793755-37811293 (-)
WSB/EiJ	ENSIUOG00005015205	pseudogene	Chr10:36546977-36564852 (-)

Homology

• Human Ortholog
  SLC60A2, solute carrier family 60 member 2

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SLC60A2, solute carrier family 60 member 2
  
• Synonyms
  KIAA1919, MFSD4B, NaGLT1
• Links
  HGNC:21053

  NCBI Gene ID: 91749

  UniProt: Q5TF39

  
  
• Chr Location
  6q21; chr6:111259327-111445354 (+)  GRCh38

---

• MGI Vertebrate Homology
  Slc60a2-ps1 stringent orthology
  1 human;1 mouse;1 zebrafish
  
• HCOP
  vertebrate homology predictions: SLC60A2

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Slc60a2-ps1
• Incidental Mutations
  APF , CvDC
• Find Mice (IMSR)
  16 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• CCDS
  CCDS48539.1

• Ensembl
  ENSMUSG00000039339 (Evidence), ENSMUSG00000121468 (Evidence)
• NCBI Gene
  72045

Representative Sequences			Length	Strain/Species
genomic	72045	NCBI Gene Model | MGI Sequence Detail	6555	C57BL/6J
transcript	NR_160807	RefSeq | MGI Sequence Detail	2298	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:6280695, MGI:6355964, MGI:8348338

References

• Summaries
  All 21

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Slc60a2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97347	Chr10:39802924-39802940 (-)	0 bp