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Cdhr5 Gene Detail
Summary
  • Symbol
    Cdhr5
  • Name
    cadherin-related family member 5
  • Synonyms
    1810074H01Rik, Mucdhl, Mupcdh
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919290
    NCBI Gene: 72040
  • Gene Overview
    MyGene.info: CDHR5
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:141269083-141276786 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 86.58 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919290
protein coding gene Chr7:141269080-141276792 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033220
protein coding gene Chr7:146451417-146459118 (-)
A/J MGP_AJ_G0033202
protein coding gene Chr7:142261700-142269401 (-)
AKR/J MGP_AKRJ_G0033134
protein coding gene Chr7:146189400-146197101 (-)
BALB/cJ MGP_BALBcJ_G0033203
protein coding gene Chr7:142005118-142012819 (-)
C3H/HeJ MGP_C3HHeJ_G0032917
protein coding gene Chr7:145948060-145955761 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033714
protein coding gene Chr7:151801651-151809352 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030687
protein coding gene Chr7:143471961-143479677 (-)
CAST/EiJ MGP_CASTEiJ_G0032247
protein coding gene Chr7:138247258-138255001 (-)
CBA/J MGP_CBAJ_G0032889
protein coding gene Chr7:156931596-156939297 (-)
DBA/2J MGP_DBA2J_G0033041
protein coding gene Chr7:140209476-140217176 (-)
FVB/NJ MGP_FVBNJ_G0032994
protein coding gene Chr7:140121669-140129370 (-)
LP/J MGP_LPJ_G0033136
protein coding gene Chr7:147947365-147955066 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033027
protein coding gene Chr7:157593693-157601394 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033734
protein coding gene Chr7:145163500-145171201 (-)
PWK/PhJ MGP_PWKPhJ_G0031951
protein coding gene Chr7:133488813-133496552 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031798
protein coding gene Chr7:131987503-131995159 (-)
WSB/EiJ MGP_WSBEiJ_G0032358
protein coding gene Chr7:146108167-146115862 (-)



Homology
more
  • Human Ortholog
    CDHR5, cadherin related family member 5
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CDHR5, cadherin related family member 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MLPCDH, MUCDHL, MUPCDH, MU-PCDH
  • Links
    NCBI Gene ID: 53841
    neXtProt AC: NX_Q9HBB8
    UniProt: Q9HBB8

  • Chr Location
    11p15.5; chr11:616565-625067 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025497 Ensembl Gene Model | MGI Sequence Detail 7704 C57BL/6J ±  kb
transcript ENSMUST00000167263 Ensembl | MGI Sequence Detail 2628 Not Applicable  
polypeptide ENSMUSP00000127292 Ensembl | MGI Sequence Detail 831 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 114
    cDNA 113
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141986
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 6
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory