1600020E01Rik Gene Detail

Summary

• Symbol
  1600020E01Rik
• Name
  RIKEN cDNA 1600020E01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919262
  NCBI Gene: 72012
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr6:86504312-86541431 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 37.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919262	lncRNA gene	Chr6:86503229-86559448 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004308	antisense lncRNA gene	Chr6:87817793-87882827 (+)
A/J	MGP_AJ_G0004286	antisense lncRNA gene	Chr6:84430648-84487109 (+)
AKR/J	MGP_AKRJ_G0004268	antisense lncRNA gene	Chr6:86876441-86934604 (+)
BALB/cJ	MGP_BALBcJ_G0004272	antisense lncRNA gene	Chr6:84442768-84499709 (+)
C3H/HeJ	MGP_C3HHeJ_G0004233	antisense lncRNA gene	Chr6:97534987-97590729 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004421	antisense lncRNA gene	Chr6:90204115-90264420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003892	antisense lncRNA gene	Chr6:82605501-82668546 (+)
CAST/EiJ	MGP_CASTEiJ_G0004182	antisense lncRNA gene	Chr6:86946127-87001217 (+)
CBA/J	MGP_CBAJ_G0004214	antisense lncRNA gene	Chr6:93752889-93812807 (+)
DBA/2J	MGP_DBA2J_G0004230	antisense lncRNA gene	Chr6:83746290-83803705 (+)
FVB/NJ	MGP_FVBNJ_G0004246	antisense lncRNA gene	Chr6:82931184-82987501 (+)
LP/J	MGP_LPJ_G0004309	antisense lncRNA gene	Chr6:87857174-87916114 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004237	antisense lncRNA gene	Chr6:97869626-97930391 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004419	antisense lncRNA gene	Chr6:86715796-86773077 (+)
PWK/PhJ	MGP_PWKPhJ_G0004135	antisense lncRNA gene	Chr6:82690406-82746968 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004078	antisense lncRNA gene	Chr6:85555746-85613168 (+)
WSB/EiJ	MGP_WSBEiJ_G0004219	antisense lncRNA gene	Chr6:87173241-87236444 (+)

Homology

• Gene Tree
  1600020E01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  75
• Gene trapped
  74
• Spontaneous
  1
• Genomic Mutations
  1 involving 1600020E01Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  29

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2

• Ensembl
  ENSMUSG00000097048 (Evidence)
• NCBI Gene
  72012

Representative Sequences			Length	Strain/Species
genomic	72012	NCBI Gene Model | MGI Sequence Detail	37120	C57BL/6J

Molecular
Reagents

• All nucleic 29

  cDNA 29

  
  

  Microarray probesets 2

References

• Summaries
  All 24

  Phenotypes 12
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:255082 Kurogi S, et al., Development of an efficient screening system to identify novel bone metabolism-related genes using the exchangeable gene trap mutagenesis mouse models. Sci Rep. 2017 Jan 20;7:40692

TSS for 1600020E01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57480	Chr6:86502309-86502334 (+)	-1,990 bp
Tssr57481	Chr6:86502404-86502430 (+)	-1,895 bp
Tssr57482	Chr6:86502872-86502889 (+)	-1,431 bp
Tssr57483	Chr6:86503257-86503281 (+)	-1,043 bp
Tssr57484	Chr6:86503626-86503701 (+)	-648 bp
Tssr57485	Chr6:86503718-86503778 (+)	-564 bp
Tssr57486	Chr6:86504294-86504306 (+)	-12 bp
Tssr57487	Chr6:86516690-86516694 (+)	12,380 bp
Tssr57488	Chr6:86524939-86524989 (+)	20,652 bp