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Synpr Gene Detail
Summary
  • Symbol
    Synpr
  • Name
    synaptoporin
  • Synonyms
    1500003F20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919253
    NCBI Gene: 72003
  • Gene Overview
    MyGene.info: SYNPR
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:13284780-13615469 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 6.86 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3671 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919253
protein coding gene Chr14:13284780-13616340 (.)
129S1/SvImJ MGP_129S1SvImJ_G0021001
protein coding gene Chr14:5754311-6109085 (+)
A/J MGP_AJ_G0020949
protein coding gene Chr14:5624680-5961892 (+)
AKR/J MGP_AKRJ_G0020926
protein coding gene Chr14:5726614-6062036 (+)
BALB/cJ MGP_BALBcJ_G0020952
protein coding gene Chr14:5631484-5970879 (+)
C3H/HeJ MGP_C3HHeJ_G0020736
protein coding gene Chr14:5811504-6160240 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021385
protein coding gene Chr14:5941261-6273507 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018954
protein coding gene Chr14:6320974-6644105 (+)
CAST/EiJ MGP_CASTEiJ_G0020258
protein coding gene Chr14:5762286-6161198 (+)
CBA/J MGP_CBAJ_G0020702
protein coding gene Chr14:6153215-6506952 (+)
DBA/2J MGP_DBA2J_G0020825
protein coding gene Chr14:5567883-5902771 (+)
FVB/NJ MGP_FVBNJ_G0020807
protein coding gene Chr14:5514827-5836757 (+)
LP/J MGP_LPJ_G0020901
protein coding gene Chr14:5763628-6107656 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020833
protein coding gene Chr14:6198668-6563322 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021418
protein coding gene Chr14:5691427-6026877 (+)
PWK/PhJ MGP_PWKPhJ_G0020010
protein coding gene Chr14:5575519-5904871 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019830
protein coding gene Chr14:5784661-6132167 (+)
WSB/EiJ MGP_WSBEiJ_G0020316
protein coding gene Chr14:5726385-6071975 (+)



Homology
more
  • Human Ortholog
    SYNPR, synaptoporin
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SYNPR, synaptoporin
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SPO
  • Links
    NCBI Gene ID: 132204
    neXtProt AC: NX_Q8TBG9
    UniProt: Q8TBG9

  • Chr Location
    3p14.2; chr3:63200604-63616924 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11407
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SYNPR
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from multigenic genotypes
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72003 NCBI Gene Model | MGI Sequence Detail 330690 C57BL/6J ±  kb
transcript NM_001163032 RefSeq | MGI Sequence Detail 2657 C57BL/6  
polypeptide Q8BGN8 UniProt | EBI | MGI Sequence Detail 265 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    cDNA 21

    Microarray probesets 4
References
more
  • Summaries
    All 31
    Developmental Gene Expression 7
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:260018 Mata A, et al., New functions of Semaphorin 3E and its receptor PlexinD1 during developing and adult hippocampal formation. Sci Rep. 2018 Jan 22;8(1):1381

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory