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Utp3 Gene Detail
Summary
  • Symbol
    Utp3
  • Name
    UTP3 small subunit processome component
  • Synonyms
    2400011K09Rik, Crlz1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919230
    NCBI Gene: 65961
  • Gene Overview
    MyGene.info: UTP3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:88554483-88556083 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 43.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    13 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919230
protein coding gene Chr5:88554462-88556090 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029709
protein coding gene Chr5:89552620-89554248 (+)
A/J MGP_AJ_G0029675
protein coding gene Chr5:86006073-86007701 (+)
AKR/J MGP_AKRJ_G0029621
protein coding gene Chr5:88850689-88852317 (+)
BALB/cJ MGP_BALBcJ_G0029685
protein coding gene Chr5:86929580-86931208 (+)
C3H/HeJ MGP_C3HHeJ_G0029408
protein coding gene Chr5:89203310-89204938 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030139
protein coding gene Chr5:93188275-93189903 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027375
protein coding gene Chr5:81830860-81832505 (+)
CAST/EiJ MGP_CASTEiJ_G0028818
protein coding gene Chr5:88629249-88630881 (+)
CBA/J MGP_CBAJ_G0029377
protein coding gene Chr5:96295773-96297401 (+)
DBA/2J MGP_DBA2J_G0029522
protein coding gene Chr5:86088677-86090305 (+)
FVB/NJ MGP_FVBNJ_G0029481
protein coding gene Chr5:85000642-85002270 (+)
LP/J MGP_LPJ_G0029610
protein coding gene Chr5:89948871-89950499 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029510
protein coding gene Chr5:101331722-101333350 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030173
protein coding gene Chr5:88374850-88376478 (+)
PWK/PhJ MGP_PWKPhJ_G0028537
protein coding gene Chr5:85175691-85177323 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028372
protein coding gene Chr5:87796040-87797670 (+)
WSB/EiJ MGP_WSBEiJ_G0028897
protein coding gene Chr5:88762362-88763990 (+)



Homology
more
  • Human Ortholog
    UTP3, UTP3, small subunit processome component
  • Vertebrate Orthologs
    9
  • Human Ortholog
    UTP3, UTP3, small subunit processome component
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CRL1, CRLZ1, SAS10
  • Links
    NCBI Gene ID: 57050
    neXtProt AC: NX_Q9NQZ2
    UniProt: Q9NQZ2

  • Chr Location
    4q13.3; chr4:70688479-70690551 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    2
  • Gene trapped
    3
  • Radiation induced
    1
  • Spontaneous
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Utp3
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 65961 NCBI Gene Model | MGI Sequence Detail 1601 C57BL/6J ±  kb
transcript NM_023054 RefSeq | MGI Sequence Detail 1646 C57BL/6  
polypeptide Q9JI13 UniProt | EBI | MGI Sequence Detail 469 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141238, MGI:2141343
References
more
  • Summaries
    All 36
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory