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Zbed5 Gene Detail
Summary
  • Symbol
    Zbed5
  • Name
    zinc finger BED-type containing 5
  • Synonyms
    2410018M08Rik, Chchd2l, Zbed5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919220
    NCBI Gene: 71970
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:129924564-129932464 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 68.26 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919220
 protein coding gene Chr5:129924564-129937350 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030134
 protein coding gene Chr5:133993636-134005731 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0030035
 protein coding gene Chr5:132514268-132516751 (+)
BALB/cJ MGP_BALBcJ_G0030112
 protein coding gene Chr5:129691726-129694199 (+)
C3H/HeJ MGP_C3HHeJ_G0029828
 protein coding gene Chr5:133072761-133076842 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030565
 protein coding gene Chr5:139118690-139132035 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027790
 protein coding gene Chr5:122727506-122736501 (+)
CAST/EiJ MGP_CASTEiJ_G0029238
 protein coding gene Chr5:132380044-132390588 (+)
CBA/J MGP_CBAJ_G0029798
 protein coding gene Chr5:144536831-144550297 (+)
DBA/2J MGP_DBA2J_G0029949
 protein coding gene Chr5:128305750-128314800 (+)
FVB/NJ MGP_FVBNJ_G0029904
 protein coding gene Chr5:127399499-127412687 (+)
LP/J MGP_LPJ_G0030037
 protein coding gene Chr5:134502116-134509934 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029936
 protein coding gene Chr5:147874566-147906441 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030605
 protein coding gene Chr5:132206690-132222333 (+)
PWK/PhJ MGP_PWKPhJ_G0028952
 protein coding gene Chr5:127236344-127245359 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028788
 protein coding gene Chr5:129764910-129773527 (+)
WSB/EiJ MGP_WSBEiJ_G0029311
 protein coding gene Chr5:132909493-132921403 (+)



Homology
more
  • Human Ortholog
    ZBED5, zinc finger BED-type containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZBED5, zinc finger BED-type containing 5
  • Synonyms
    Buster1
  • Links
    NCBI Gene ID: 58486
    neXtProt AC: NX_Q49AG3
    UniProt: Q49AG3

  • Chr Location
    11p15.4; chr11:10812074-10858796 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    23
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000034173 Ensembl Gene Model | MGI Sequence Detail 7901 C57BL/6J ±  kb
    transcript ENSMUST00000041466 Ensembl | MGI Sequence Detail 2492 Not Applicable  
    polypeptide ENSMUSP00000044533 Ensembl | MGI Sequence Detail 756 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR026630 EPM2A-interacting protein 1/ZBED8-like
      IPR012337 Ribonuclease H-like superfamily
    Molecular
    Reagents
    less
    • All nucleic 23
      cDNA 23

      Microarray probesets 5
    References
    more
    • Summaries
      All 36
      Gene Ontology 1
      Phenotypes 16
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/23/2024
    MGI 6.23     		The Jackson Laboratory