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Endod1
Gene Detail
 Symbol
Name
ID
Endod1
endonuclease domain containing 1
MGI:1919196
Synonyms 2210414F18Rik, 2310067E08Rik
Feature Type protein coding gene
Genetic Map
Chromosome 9
3.96 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:14353990-14381242 bp, - strand
From NCBI annotation of GRCm38

  27253 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12425  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Endod1

Human
homologs
Human Homolog ENDOD1, endonuclease domain containing 1
NCBI Gene ID 23052
neXtProt AC  NX_O94919
Human Chr (Location)  11q21; chr11:95089810-95132651 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Endod1 interacts with 267 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process biological_process
Component extracellular region, extracellular vesicular exosome, ...
Function endonuclease activity, hydrolase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (18)    Tissues (15)   
Theiler Stages: 20, 22, 24, 26, 27, 28
Assay TypeResults
RNA in situ 18
cDNA source data(63)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(64) cDNA(64)
Microarray probesets(9)
Other database
links
Ensembl Gene ModelENSMUSG00000037419 (Evidence)
Entrez Gene71946 (Evidence)
UniGene41423
DFCITC1579109, TC1579333, TC1634134
DoTSDT.110616658, DT.40138557, DT.99871261
NIA Mouse Gene IndexU030481
EC3.1.30.-
Consensus CDS ProjectCCDS22821.1
International Mouse Knockout Project StatusEndod1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 71946 NCBI Gene Model | MGI Sequence Detail 27253 C57BL/6J ±  kb
transcript NM_028013 RefSeq | MGI Sequence Detail 4470 C57BL/6 
polypeptide Q8C522 UniProt | EBI | MGI Sequence Detail 501 Not Applicable 

For the selected sequences
All sequences(44) RefSeq(4) UniProt(5)
Polymorphisms SNPs within 2kb(138 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001604 DNA/RNA non-specific endonuclease
InterPro IPR020821 Extracellular Endonuclease, subunit A
Protein Ontology PR:000007075 endonuclease domain-containing 1 protein
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(35)
Other
accession IDs
MGI:1917399, MGI:2143423

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory