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Rpusd1 Gene Detail
Summary
  • Symbol
    Rpusd1
  • Name
    RNA pseudouridylate synthase domain containing 1
  • Synonyms
    2310051D06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919186
    NCBI Gene: 106707
Location & Maps
more
  • Sequence Map
    Chr17:25727751-25731456 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3706 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.83 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    RPUSD1, RNA pseudouridylate synthase domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RPUSD1, RNA pseudouridylate synthase domain containing 1
    Orthology source: HomoloGene
  • Synonyms
    C16orf40, RLUCL
  • Links
    NCBI Gene ID: 113000
    neXtProt AC: NX_Q9UJJ7

  • Chr Location
    16p13.3; chr16:784974-788387 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    8
  • Gene trapped
    3
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    2 involving Rpusd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041199 Ensembl Gene Model | MGI Sequence Detail 3706 C57BL/6J ±  kb
transcript ENSMUST00000047273 Ensembl | MGI Sequence Detail 1703 Not Applicable  
polypeptide ENSMUSP00000043825 Ensembl | MGI Sequence Detail 306 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    63 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031248 RNA pseudouridylate synthase domain-containing protein 1
  • InterPro Domains
    IPR020103 Pseudouridine synthase, catalytic domain
    IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F
Molecular
Reagents
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  • All nucleic 26
    cDNA 26

    Microarray probesets 3
Other
Accession IDs
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MGI:2146980
References
more
  • Summaries
    All 22
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory