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Borcs6 Gene Detail
Summary
  • Symbol
    Borcs6
  • Name
    BLOC-1 related complex subunit 6
  • Synonyms
    2310047M10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919173
    NCBI Gene: 71923
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:69059775-69061576 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 42.33 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    27 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919173
 protein coding gene Chr11:69059717-69061578 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018515
 protein coding gene Chr11:69465593-69467454 (+)
A/J MGP_AJ_G0018484
 protein coding gene Chr11:66850659-66852520 (+)
AKR/J MGP_AKRJ_G0018453
 protein coding gene Chr11:68849760-68851621 (+)
BALB/cJ MGP_BALBcJ_G0018455
 protein coding gene Chr11:67172323-67174184 (+)
C3H/HeJ MGP_C3HHeJ_G0018268
 protein coding gene Chr11:68869294-68871155 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018907
 protein coding gene Chr11:71575314-71577175 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016551
 protein coding gene Chr11:63790871-63792736 (+)
CAST/EiJ MGP_CASTEiJ_G0017824
 protein coding gene Chr11:69107785-69109646 (+)
CBA/J MGP_CBAJ_G0018242
 protein coding gene Chr11:74782426-74784287 (+)
DBA/2J MGP_DBA2J_G0018351
 protein coding gene Chr11:66450309-66452170 (+)
FVB/NJ MGP_FVBNJ_G0018341
 protein coding gene Chr11:66072066-66073927 (+)
LP/J MGP_LPJ_G0018422
 protein coding gene Chr11:70052260-70054121 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018364
 protein coding gene Chr11:75412900-75414761 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018948
 protein coding gene Chr11:69097694-69099555 (+)
PWK/PhJ MGP_PWKPhJ_G0017599
 protein coding gene Chr11:67086123-67087984 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017387
 protein coding gene Chr11:68932198-68934059 (+)
WSB/EiJ MGP_WSBEiJ_G0017877
 protein coding gene Chr11:68740904-68742765 (+)



Homology
more
  • Human Ortholog
    BORCS6, BLOC-1 related complex subunit 6
  • Vertebrate Orthologs
    7
  • Human Ortholog
    BORCS6, BLOC-1 related complex subunit 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C17orf59, PRO2472
  • Links
    NCBI Gene ID: 54785
    neXtProt AC: NX_Q96GS4
    UniProt: Q96GS4

  • Chr Location
    17p13.1; chr17:8188333-8190246 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
    33
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71923 NCBI Gene Model | MGI Sequence Detail 1802 C57BL/6J ±  kb
transcript NM_028005 RefSeq | MGI Sequence Detail 1802 C57BL/6  
polypeptide Q9D6W8 UniProt | EBI | MGI Sequence Detail 360 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR019314 BLOC-1-related complex subunit 6
Molecular
Reagents
less
  • All nucleic 33
    cDNA 33

    Microarray probesets 4
References
more
  • Summaries
    All 28
    Gene Ontology 3
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:251831 Kalin S, et al., A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function. Cell Metab. 2017 Sep 5;26(3):475-492.e7
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/13/2019
MGI 6.13 		The Jackson Laboratory