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Slc17a9 Gene Detail
Summary
  • Symbol
    Slc17a9
  • Name
    solute carrier family 17, member 9
  • Synonyms
    1700019H03Rik, MGC:28538, Vnut
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919107
    NCBI Gene: 228993
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:180725263-180742280 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 103.28 cM, cytoband H4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919107
protein coding gene Chr2:180725209-180742280 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027002
protein coding gene Chr2:187263336-187286751 (+)
A/J MGP_AJ_G0026968
protein coding gene Chr2:179569990-179589356 (+)
AKR/J MGP_AKRJ_G0026938
protein coding gene Chr2:184954722-184973827 (+)
BALB/cJ MGP_BALBcJ_G0026977
protein coding gene Chr2:180032295-180049918 (+)
C3H/HeJ MGP_C3HHeJ_G0026718
protein coding gene Chr2:185302502-185322936 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027423
protein coding gene Chr2:192669116-192690207 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024788
protein coding gene Chr2:170261621-170277745 (+)
CAST/EiJ MGP_CASTEiJ_G0026177
protein coding gene Chr2:183548254-183564944 (+)
CBA/J MGP_CBAJ_G0026695
protein coding gene Chr2:199675667-199695490 (+)
DBA/2J MGP_DBA2J_G0026833
protein coding gene Chr2:178665847-178684656 (+)
FVB/NJ MGP_FVBNJ_G0026799
protein coding gene Chr2:177281558-177301421 (+)
LP/J MGP_LPJ_G0026934
protein coding gene Chr2:187272959-187295993 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026818
protein coding gene Chr2:202265863-202285728 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027482
protein coding gene Chr2:184912166-184929849 (+)
PWK/PhJ MGP_PWKPhJ_G0025913
protein coding gene Chr2:176179591-176197526 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025713
protein coding gene Chr2:181408686-181430685 (+)
WSB/EiJ MGP_WSBEiJ_G0026249
protein coding gene Chr2:185893222-185914671 (+)



Homology
more
  • Human Ortholog
    SLC17A9, solute carrier family 17 member 9
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SLC17A9, solute carrier family 17 member 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C20orf59, POROK8, VNUT
  • Links
    NCBI Gene ID: 63910
    neXtProt AC: NX_Q9BYT1
    UniProt: Q9BYT1

  • Chr Location
    20q13.33; chr20:62952647-62968597 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 3 alleles in 3 genetic backgrounds
    14 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous knockout affects the neuroendocrine system, resulting in hypoglycemia, increased glucose tolerance and increased insulin sensitivity.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000023393 Ensembl Gene Model | MGI Sequence Detail 17018 C57BL/6J ±  kb
    transcript ENSMUST00000094218 Ensembl | MGI Sequence Detail 2275 Not Applicable  
    polypeptide ENSMUSP00000091771 Ensembl | MGI Sequence Detail 447 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 33
      cDNA 33

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2670971
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 14
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:246118 Ihara T, et al., Clock Genes Regulate the Circadian Expression of Piezo1, TRPV4, Connexin26, and VNUT in an Ex Vivo Mouse Bladder Mucosa. PLoS One. 2017;12(1):e0168234

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory