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Syce2
Gene Detail
Symbol

Name
ID
Syce2
synaptonemal complex central element protein 2
MGI:1919096
Synonyms
1700013H19Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
41.25 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:84872111-84888221 bp, + strand
From VEGA annotation of GRCm38

  16111 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12414  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Syce2

Human
homologs
Human Homolog SYCE2, synaptonemal complex central element protein 2
NCBI Gene ID 256126
neXtProt AC  NX_Q6PIF2
Human Synonyms  CESC1
Human Chr (Location)  19p13.2; chr19:12898738-12919302 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(6) Targeted(4)
 
Mice homogyzous for a null mutation are infertile with decreases in testis and ovary weights, arrest of spermatogenesis, and abnormal meiosis.
 
Interactions
Syce2 interacts with 150 markers (Mir1b, Mir16-2, Mir23a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process cell cycle, cell division, ...
Component central element, chromosome, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (1)    Tissues (1)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000022282 (Evidence)
Ensembl Gene ModelENSMUSG00000003824 (Evidence)
Entrez Gene71846 (Evidence)
DFCITC1581265, TC1632376
NIA Mouse Gene IndexU009578
Consensus CDS ProjectCCDS22481.1, CCDS52620.1
International Mouse Knockout Project StatusSyce2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022282 VEGA Gene Model | MGI Sequence Detail 16111 C57BL/6J ±  kb
transcript OTTMUST00000053070 VEGA | MGI Sequence Detail 1686 Not Applicable 
polypeptide OTTMUSP00000025218 VEGA | MGI Sequence Detail 171 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(7) UniProt(4)
Polymorphisms
SNPs within 2kb(123 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000015860 synaptonemal complex central element protein 2
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:208310 Fraune J, et al., Phylogenies of central element proteins reveal the dynamic evolutionary history of the mammalian synaptonemal complex: ancient and recent components. Genetics. 2013 Nov;195(3):781-93
All references(38)
Other
accession IDs
MGI:2140728

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory