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R3hcc1 Gene Detail
Summary
  • Symbol
    R3hcc1
  • Name
    R3H domain and coiled-coil containing 1
  • Synonyms
    1700020M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919093
    NCBI Gene: 71843
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:69697307-69707584 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 36.08 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    166 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919093
protein coding gene Chr14:69697304-69714809 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021523
protein coding gene Chr14:64268523-64283863 (-)
A/J MGP_AJ_G0021482
protein coding gene Chr14:62952417-62962598 (-)
AKR/J MGP_AKRJ_G0021458
protein coding gene Chr14:64835542-64847532 (-)
BALB/cJ MGP_BALBcJ_G0021488
protein coding gene Chr14:62712659-62722800 (-)
C3H/HeJ MGP_C3HHeJ_G0021265
protein coding gene Chr14:64558607-64569556 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021927
protein coding gene Chr14:67185447-67195616 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019467
protein coding gene Chr14:60798428-60808745 (-)
CAST/EiJ MGP_CASTEiJ_G0020782
protein coding gene Chr14:61107532-61117689 (-)
CBA/J MGP_CBAJ_G0021232
protein coding gene Chr14:69282250-69297288 (-)
DBA/2J MGP_DBA2J_G0021355
protein coding gene Chr14:62336762-62347257 (-)
FVB/NJ MGP_FVBNJ_G0021334
protein coding gene Chr14:61755621-61767931 (-)
LP/J MGP_LPJ_G0021425
protein coding gene Chr14:65543023-65554563 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021363
protein coding gene Chr14:68223922-68235033 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021950
protein coding gene Chr14:64098785-64109501 (-)
PWK/PhJ MGP_PWKPhJ_G0020526
protein coding gene Chr14:59090664-59101546 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020359
protein coding gene Chr14:60031855-60043889 (-)
WSB/EiJ MGP_WSBEiJ_G0020835
protein coding gene Chr14:64396137-64406310 (-)



Homology
more
  • Human Ortholog
    R3HCC1, R3H domain and coiled-coil containing 1
  • Vertebrate Orthologs
    2
  • Human Ortholog
    R3HCC1, R3H domain and coiled-coil containing 1
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 203069
    neXtProt AC: NX_Q9Y3T6
    UniProt: Q9Y3T6

  • Chr Location
    8p21.3; chr8:23288092-23296279 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034194 Ensembl Gene Model | MGI Sequence Detail 10278 C57BL/6J ±  kb
transcript ENSMUST00000118374 Ensembl | MGI Sequence Detail 1726 Not Applicable  
polypeptide ENSMUSP00000113450 Ensembl | MGI Sequence Detail 488 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR039884 Coiled-coil domain-containing protein R3HC1/R3HCL
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR001374 R3H domain
    IPR036867 R3H domain superfamily
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 4
Other
Accession IDs
less
MGI:1353600
References
more
  • Summaries
    All 30
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/11/2018
MGI 6.13
The Jackson Laboratory