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Phf7 Gene Detail
Summary
  • Symbol
    Phf7
  • Name
    PHD finger protein 7
  • Synonyms
    1700006H01Rik, 1700010P14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919088
    NCBI Gene: 71838
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:31237689-31251317 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 19.09 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    39 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919088
protein coding gene Chr14:31237689-31251368 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021124
protein coding gene Chr14:24413743-24427268 (-)
A/J MGP_AJ_G0021072
protein coding gene Chr14:23491240-23504787 (-)
AKR/J MGP_AKRJ_G0021049
protein coding gene Chr14:24615234-24628745 (-)
BALB/cJ MGP_BALBcJ_G0021076
protein coding gene Chr14:23615944-23629832 (-)
C3H/HeJ MGP_C3HHeJ_G0020859
protein coding gene Chr14:24484621-24500041 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021508
protein coding gene Chr14:25381485-25395017 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019071
protein coding gene Chr14:23556296-23570202 (-)
CAST/EiJ MGP_CASTEiJ_G0020384
protein coding gene Chr14:24249041-24264274 (-)
CBA/J MGP_CBAJ_G0020826
protein coding gene Chr14:26353961-26367483 (-)
DBA/2J MGP_DBA2J_G0020948
protein coding gene Chr14:23521357-23535140 (-)
FVB/NJ MGP_FVBNJ_G0020932
protein coding gene Chr14:23483778-23497456 (-)
LP/J MGP_LPJ_G0021017
protein coding gene Chr14:24738822-24755441 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020958
protein coding gene Chr14:25617796-25632639 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021541
protein coding gene Chr14:24376556-24389898 (-)
PWK/PhJ MGP_PWKPhJ_G0020132
protein coding gene Chr14:22979208-22993615 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019956
protein coding gene Chr14:23973698-23988598 (-)
WSB/EiJ MGP_WSBEiJ_G0020439
protein coding gene Chr14:24439187-24452686 (-)



Homology
more
  • Human Ortholog
    PHF7, PHD finger protein 7
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PHF7, PHD finger protein 7
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSPC045, HSPC226, NYD-SP6
  • Links
    NCBI Gene ID: 51533
    neXtProt AC: NX_Q9BWX1
    UniProt: Q9BWX1

  • Chr Location
    3p21.1; chr3:52410508-52423641 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021902 Ensembl Gene Model | MGI Sequence Detail 13629 C57BL/6J ±  kb
transcript ENSMUST00000022459 Ensembl | MGI Sequence Detail 2084 Not Applicable  
polypeptide ENSMUSP00000022459 Ensembl | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 12
Other
Accession IDs
less
MGI:1916609, MGI:2145634, MGI:2145840
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory