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Gtf2a1l
Gene Detail
 Symbol
Name
ID
Gtf2a1l
general transcription factor IIA, 1-like
MGI:1919078
Synonyms 1700011N16Rik, Alf, Gtf2a1lf
Feature Type protein coding gene
Genetic Map
Chromosome 17
58.22 cM, cytoband E5
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:88668660-88715152 bp, + strand
From VEGA annotation of GRCm38

  46493 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:86732  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Gtf2a1l

Human
homologs
Human Homolog GTF2A1L, general transcription factor IIA, 1-like
NCBI Gene ID 11036
neXtProt AC  NX_Q9UNN4
Human Synonyms  ALF
Human Chr (Location)  2p16.3; chr2:48617798-48679609 (+)  GRCh38
Alleles
and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process cognition, regulation of transcription, DNA-templated, ...
Component cytoplasm, nucleus, ...
Function DNA binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (192)    Tissues (161)    Images (18)
Theiler Stages: 1, 5, 16, 18, 21, 22, 23, 24, 26, 28
Assay TypeResults
RNA in situ 147
RT-PCR 45
cDNA source data(8)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(11) cDNA(9) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000028528 (Evidence)
Ensembl Gene ModelENSMUSG00000024154 (Evidence)
Entrez Gene71828 (Evidence)
UniGene61330
DFCITC1585035
DoTSDT.60105144, DT.94282263
NIA Mouse Gene IndexU018335
Consensus CDS ProjectCCDS29024.1
International Mouse Knockout Project StatusGtf2a1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028528 VEGA Gene Model | MGI Sequence Detail 46493 C57BL/6J ±  kb
transcript OTTMUST00000070701 VEGA | MGI Sequence Detail 1621 Not Applicable 
polypeptide OTTMUSP00000036067 VEGA | MGI Sequence Detail 468 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(2) UniProt(2)
Polymorphisms SNPs within 2kb(131 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004855 Transcription factor IIA, alpha/beta subunit
InterPro IPR013028 Transcription factor IIA, alpha subunit, N-terminal
InterPro IPR009088 Transcription factor IIA, beta-barrel
InterPro IPR009083 Transcription factor IIA, helical
Protein Ontology PR:000008311 TFIIA-alpha and beta-like factor
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory