Gtf2a1l
Gene Detail

Symbol Name ID

Gtf2a1l general transcription factor IIA, 1-like MGI:1919078

Synonyms

1700011N16Rik, Alf, Gtf2a1lf

Feature Type

protein coding gene

Genetic Map

Chromosome 17

58.22 cM, cytoband E5
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr17:88668660-88715152 bp, + strand From VEGA annotation of GRCm38   46493 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:86732  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Gtf2a1l

Human homologs

Human Homolog		GTF2A1L, general transcription factor IIA, 1-like
NCBI Gene ID		11036
neXtProt AC		NX_Q9UNN4
Human Synonyms		ALF
Human Chr (Location)		2p16.3; chr2:48844937-48906748 (+)  GRCh37.p10

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Process	regulation of transcription, DNA-dependent, transcription, DNA-dependent, ...
Component	cytoplasm, nucleus, ...
Function	DNA binding, protein binding

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (192)    Tissues (161)    Images (18)
Theiler Stages: 1, 5, 16, 18, 21, 22, 23, 24, 26, 28

Assay Type	Results
RNA in situ	147
RT-PCR	45

cDNA source data(8)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(11) cDNA(9) Primer pair(2)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000028528 (Evidence)
Ensembl Gene Model	ENSMUSG00000024154 (Evidence)
Entrez Gene	71828 (Evidence)
UniGene	61330
DFCI	TC1585035
DoTS	DT.60105144, DT.94282263
NIA Mouse Gene Index	U018335
Consensus CDS Project	CCDS29024.1
International Mouse Knockout Project Status	Gtf2a1l

Sequences

Length	Strain/Species
genomic	OTTMUSG00000028528	VEGA Gene Model | MGI Sequence Detail	46493	C57BL/6J
transcript	OTTMUST00000070701	VEGA | MGI Sequence Detail	1621	Not Applicable
polypeptide	OTTMUSP00000036067	VEGA | MGI Sequence Detail	468	Not Applicable

All sequences(25) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(107 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR004855	Transcription factor IIA, alpha/beta subunit
InterPro	IPR013028	Transcription factor IIA, alpha subunit, N-terminal
InterPro	IPR009088	Transcription factor IIA, beta-barrel
InterPro	IPR009083	Transcription factor IIA, helical
Protein Ontology	PR:000008311	TFIIA-alpha and beta-like factor

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48
All references(32)