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Gtf2a1l
Gene Detail
Symbol

Name
ID
Gtf2a1l
general transcription factor IIA, 1-like
MGI:1919078
Synonyms
1700011N16Rik, Alf, Gtf2a1lf
Feature Type
protein coding gene
Genetic Map
Chromosome 17
58.22 cM, cytoband E5
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:88668660-88715152 bp, + strand
From VEGA annotation of GRCm38

  46493 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:86732  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GTF2A1L
Gene Tree: Gtf2a1l

Human
homologs
GTF2A1L, general transcription factor IIA, 1-like
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 11036
neXtProt AC: NX_Q9UNN4

Human Synonyms: ALF

Human Chr (Location): 2p16.3; chr2:48617780-48679609 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gtf2a1l interacts with 32 markers (Mir26a-1, Mir26a-2, Mir26b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process cognition, regulation of transcription, DNA-templated, ...
Component cytoplasm, nucleus, ...
Function DNA binding, protein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (192)    Tissues (163)    Images (18)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 147
RT-PCR 45
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gtf2a1l    NEW 
Molecular
reagents
All nucleic(11) cDNA(9) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000028528 (Evidence)
Ensembl Gene Model ENSMUSG00000024154 (Evidence)
Entrez Gene 71828 (Evidence)
UniGene 61330
DFCI TC1585035
DoTS DT.60105144, DT.94282263
NIA Mouse Gene Index U018335
Consensus CDS Project CCDS29024.1
International Mouse Phenotyping Consortium Status Gtf2a1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028528 VEGA Gene Model | MGI Sequence Detail 46493 C57BL/6J ±  kb
transcript OTTMUST00000070701 VEGA | MGI Sequence Detail 1621 Not Applicable 
polypeptide OTTMUSP00000036067 VEGA | MGI Sequence Detail 468 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(131 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004855 Transcription factor IIA, alpha/beta subunit
InterPro IPR013028 Transcription factor IIA, alpha subunit, N-terminal
InterPro IPR009088 Transcription factor IIA, beta-barrel
InterPro IPR009083 Transcription factor IIA, helical
Protein Ontology PR:000008311 TFIIA-alpha and beta-like factor
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory