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3300002A11Rik Gene Detail
Summary
  • Symbol
    3300002A11Rik
  • Name
    RIKEN cDNA 3300002A11 gene
  • Synonyms
    2700016B18Rik
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:1919073
    NCBI Gene: 100503812
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:99341154-99361827 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 50.00 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    232 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919073
antisense lncRNA gene Chr12:99340577-99361828 (.)
129S1/SvImJ MGP_129S1SvImJ_G0003157
antisense lncRNA gene Chr12:100745484-100767170 (+)
A/J MGP_AJ_G0003133
antisense lncRNA gene Chr12:96976724-96998313 (+)
AKR/J MGP_AKRJ_G0003113
antisense lncRNA gene Chr12:99589385-99615001 (+)
BALB/cJ MGP_BALBcJ_G0003120
antisense lncRNA gene Chr12:97323708-97344873 (+)
C3H/HeJ MGP_C3HHeJ_G0003076
antisense lncRNA gene Chr12:100133996-100156794 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003263
antisense lncRNA gene Chr12:103852140-103875518 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002796
antisense lncRNA gene Chr12:93947659-93968780 (+)
CAST/EiJ MGP_CASTEiJ_G0003045
antisense lncRNA gene Chr12:95212966-95237460 (+)
CBA/J MGP_CBAJ_G0003073
antisense lncRNA gene Chr12:107696064-107716623 (+)
DBA/2J MGP_DBA2J_G0003078
antisense lncRNA gene Chr12:96408553-96429755 (+)
FVB/NJ MGP_FVBNJ_G0003098
antisense lncRNA gene Chr12:95123541-95144108 (+)
LP/J MGP_LPJ_G0003153
antisense lncRNA gene Chr12:100594575-100617816 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003087
antisense lncRNA gene Chr12:111367265-111390107 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003267
antisense lncRNA gene Chr12:99157442-99178844 (+)
PWK/PhJ MGP_PWKPhJ_G0003003
antisense lncRNA gene Chr12:91026618-91047388 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002947
antisense lncRNA gene Chr12:93315330-93337700 (+)
WSB/EiJ MGP_WSBEiJ_G0003076
antisense lncRNA gene Chr12:99995165-100016687 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Targeted
    2
  • Genomic Mutations
    1 involving 3300002A11Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033731 Ensembl Gene Model | MGI Sequence Detail 20674 C57BL/6J ±  kb
transcript ENSMUST00000046994 Ensembl | MGI Sequence Detail 654 Not Applicable  
polypeptide Q9CXH4 UniProt | EBI | MGI Sequence Detail 142 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919851
References
more
  • Summaries
    All 23
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/11/2018
MGI 6.13
The Jackson Laboratory