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Ptcd1 Gene Detail
Summary
  • Symbol
    Ptcd1
  • Name
    pentatricopeptide repeat domain 1
  • Synonyms
    1110069M14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919049
    NCBI Gene: 71799
Location & Maps
more
  • Sequence Map
    Chr5:145147514-145167108 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      19595 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 85.06 cM, cytoband G2
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    ATP5J2-PTCD1, ATP5J2-PTCD1 readthrough
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ATP5J2-PTCD1, ATP5J2-PTCD1 readthrough
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 100526740

  • Chr Location
    7q; chr7:99416739-99466201 (-)  GRCh38.p2

  • Human Ortholog
    PTCD1, pentatricopeptide repeat domain 1
    Orthology source: HGNC
  • Links
    NCBI Gene ID: 26024
    neXtProt AC: NX_O75127

  • Chr Location
    7q22.1; chr7:99416739-99438839 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    7
  • Gene trapped
    6
  • Targeted
    1
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023010 VEGA Gene Model | MGI Sequence Detail 19595 C57BL/6J ±  kb
transcript OTTMUST00000055426 VEGA | MGI Sequence Detail 3087 Not Applicable  
polypeptide OTTMUSP00000026538 VEGA | MGI Sequence Detail 695 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    141 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR002885 Pentatricopeptide repeat
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory