Shroom1
Gene Detail

Symbol Name ID

Shroom1 shroom family member 1 MGI:1919024

Synonyms

1300007L22Rik, Apx, Shrm1

Feature Type

protein coding gene

Genetic Map

Chromosome 11

31.95 cM, cytoband B1.3
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr11:53457205-53467766 bp, + strand From VEGA annotation of GRCm38   10562 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:12411  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Shroom1

Human homologs

Human Homolog		SHROOM1, shroom family member 1
NCBI Gene ID		134549
neXtProt AC		NX_Q2M3G4
Human Synonyms		APXL2
Human Chr (Location)		5q31.1; chr5:132157833-132166590 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(4) : Targeted(3) Gene trapped(1)

Gene Ontology (GO) classifications

All GO classifications: (9 annotations)

Process	actin filament bundle assembly, cell morphogenesis
Component	cytoplasm, cytoskeleton, ...
Function	actin binding, actin filament binding

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (12)
Theiler Stages: 22

Assay Type	Results
RNA in situ	94

cDNA source data(22)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(24) Genomic(1) cDNA(22) Primer pair(1)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000005639 (Evidence)
Ensembl Gene Model	ENSMUSG00000018387 (Evidence)
Entrez Gene	71774 (Evidence)
UniGene	274370
DFCI	TC1581235, TC1597952, TC1618094
DoTS	DT.101261081, DT.101719806, DT.40181838, DT.60105339, DT.97376358
NIA Mouse Gene Index	U012596
Consensus CDS Project	CCDS24680.2
International Mouse Knockout Project Status	Shroom1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000005639	VEGA Gene Model | MGI Sequence Detail	10562	C57BL/6J
transcript	OTTMUST00000071555	VEGA | MGI Sequence Detail	3312	Not Applicable
polypeptide	OTTMUSP00000036693	VEGA | MGI Sequence Detail	823	Not Applicable

All sequences(44) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(21 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR014800	Apx/shroom, ASD1
InterPro	IPR014799	Apx/shroom, ASD2
Protein Ontology	PR:000014854	protein Shroom1

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(30)