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Gtf3c2 Gene Detail
Summary
  • Symbol
    Gtf3c2
  • Name
    general transcription factor IIIC, polypeptide 2, beta
  • Synonyms
    1300004C11Rik, 2610510G03Rik, mKIAA0011, TFIIIC110, TFIIIC-BETA
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919002
    NCBI Gene: 71752
  • Gene Overview
    MyGene.info: GTF3C2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:31156006-31180144 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 17.15 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919002
protein coding gene Chr5:31156005-31180144 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029414
protein coding gene Chr5:29142686-29167917 (-)
A/J MGP_AJ_G0029380
protein coding gene Chr5:28184576-28208962 (-)
AKR/J MGP_AKRJ_G0029330
protein coding gene Chr5:29333620-29360113 (-)
BALB/cJ MGP_BALBcJ_G0029391
protein coding gene Chr5:28700527-28725490 (-)
C3H/HeJ MGP_C3HHeJ_G0029112
protein coding gene Chr5:29347548-29372742 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029844
protein coding gene Chr5:30947047-30972952 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027082
protein coding gene Chr5:25648724-25675151 (-)
CAST/EiJ MGP_CASTEiJ_G0028522
protein coding gene Chr5:28435463-28461270 (-)
CBA/J MGP_CBAJ_G0029080
protein coding gene Chr5:31515614-31544214 (-)
DBA/2J MGP_DBA2J_G0029229
protein coding gene Chr5:28362948-28387027 (-)
FVB/NJ MGP_FVBNJ_G0029187
protein coding gene Chr5:27778419-27804213 (-)
LP/J MGP_LPJ_G0029314
protein coding gene Chr5:29597385-29623533 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029216
protein coding gene Chr5:32386754-32412902 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029878
protein coding gene Chr5:28850953-28875723 (-)
PWK/PhJ MGP_PWKPhJ_G0028247
protein coding gene Chr5:27485128-27509635 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028077
protein coding gene Chr5:28235747-28261774 (-)
WSB/EiJ MGP_WSBEiJ_G0028603
protein coding gene Chr5:28914494-28940012 (-)



Homology
more
  • Human Ortholog
    GTF3C2, general transcription factor IIIC subunit 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    GTF3C2, general transcription factor IIIC subunit 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TFIIIC110, TFIIIC-BETA
  • Links
    NCBI Gene ID: 2976
    neXtProt AC: NX_Q8WUA4
    UniProt: Q8WUA4

  • Chr Location
    2p23.3; chr2:27325849-27357034 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 71752 NCBI Gene Model | MGI Sequence Detail 24139 C57BL/6J ±  kb
transcript NM_027901 RefSeq | MGI Sequence Detail 4551 C57BL/6  
polypeptide NP_082177 RefSeq | MGI Sequence Detail 907 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 242
    cDNA 240
    Primer pair 1
    Other 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:1914747, MGI:2140819, MGI:2141080
References
more
  • Summaries
    All 46
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 2
    Phenotypes 21
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory