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Gtf3c2
Gene Detail
Symbol

Name
ID
Gtf3c2
general transcription factor IIIC, polypeptide 2, beta
MGI:1919002
Synonyms
1300004C11Rik, 2610510G03Rik, mKIAA0011, TFIIIC110, TFIIIC-BETA
Feature Type
protein coding gene
Genetic Map
Chromosome 5
17.15 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:31156005-31180144 bp, - strand
From VEGA annotation of GRCm38

  24140 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37490  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: human transcription factor IIIC2 beta chain
Gene Tree: Gtf3c2

Human
homologs
Human Homolog GTF3C2, general transcription factor IIIC, polypeptide 2, beta 110kDa
NCBI Gene ID 2976
neXtProt AC  NX_Q8WUA4
Human Synonyms  TFIIIC110, TFIIIC-BETA
Human Chr (Location)  2p23.3; chr2:27325849-27357034 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Radiation induced(2)
Genomic Mutations involving Gtf3c2 (2)
Incidental mutations (data from Mutagenetix , APF )
Alleles Annotated to Human Diseases(1)   
Interactions
Gtf3c2 interacts with 254 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process transcription, DNA-templated, transcription from RNA polymerase III promoter
Component nucleus, transcription factor TFIIIC complex
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (189)    Tissues (110)    Images (41)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 189
cDNA source data(238)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(239) cDNA(238) Primer pair(1)
Microarray probesets(10)
Other database
links
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022465 VEGA Gene Model | MGI Sequence Detail 24140 C57BL/6J ±  kb
transcript OTTMUST00000053732 VEGA | MGI Sequence Detail 3933 Not Applicable 
polypeptide OTTMUSP00000025564 VEGA | MGI Sequence Detail 950 Not Applicable 

For the selected sequences
All sequences(106) RefSeq(14) UniProt(9)
Polymorphisms
SNPs within 2kb(79 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001680 WD40 repeat
InterPro IPR019775 WD40 repeat, conserved site
InterPro IPR017986 WD40-repeat-containing domain
InterPro IPR015943 WD40/YVTN repeat-like-containing domain
Protein Ontology PR:000008326 general transcription factor 3C polypeptide 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(30)
Other
accession IDs
MGI:1914747, MGI:2140819, MGI:2141080

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory