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Gtf3c2
Gene Detail
Symbol

Name
ID
Gtf3c2
general transcription factor IIIC, polypeptide 2, beta
MGI:1919002
Synonyms
1300004C11Rik, 2610510G03Rik, mKIAA0011, TFIIIC110, TFIIIC-BETA
Feature Type
protein coding gene
Genetic Map
Chromosome 5
17.15 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:31156005-31180144 bp, - strand
From VEGA annotation of GRCm38

  24140 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37490  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GTF3C2
Protein SuperFamily: human transcription factor IIIC2 beta chain
Gene Tree: Gtf3c2

Human
homologs
GTF3C2, general transcription factor IIIC, polypeptide 2, beta 110kDa
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 2976
neXtProt AC: NX_Q8WUA4

Human Synonyms: TFIIIC110, TFIIIC-BETA

Human Chr (Location): 2p23.3; chr2:27325849-27357034 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Radiation induced(3)
Genomic Mutations involving Gtf3c2 (3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Mutations Annotated to Human Diseases (1)    Phenotype Images(4)
Interactions
Gtf3c2 interacts with 254 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process transcription, DNA-templated, transcription from RNA polymerase III promoter
Component transcription factor TFIIIC complex
Function DNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (189)    Tissues (110)    Images (41)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 189
cDNA source data(238)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase gtf3c2    NEW 
Molecular
reagents
All nucleic(239) cDNA(238) Primer pair(1)
Microarray probesets(10)
Other database
links
VEGA Gene Model OTTMUSG00000022465 (Evidence)
Ensembl Gene Model ENSMUSG00000029144 (Evidence)
Entrez Gene 71752 (Evidence)
UniGene 271923
DFCI TC1573431, TC1580743, TC1596555, TC1597216, TC1621890, TC1646438
DoTS DT.101134089, DT.101313425, DT.101397767, DT.101397777, DT.101739652, DT.110647569, DT.40185895, DT.480776, DT.87069447, DT.97387627
Consensus CDS Project CCDS39053.1
International Mouse Phenotyping Consortium Status Gtf3c2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022465 VEGA Gene Model | MGI Sequence Detail 24140 C57BL/6J ±  kb
transcript OTTMUST00000053732 VEGA | MGI Sequence Detail 3933 Not Applicable 
polypeptide OTTMUSP00000025564 VEGA | MGI Sequence Detail 950 Not Applicable 

For the selected sequences
All sequences(100) RefSeq(16)
Polymorphisms
SNPs within 2kb(79 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000008326 general transcription factor 3C polypeptide 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:1914747, MGI:2140819, MGI:2141080

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory