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R3hdm2 Gene Detail
Summary
  • Symbol
    R3hdm2
  • Name
    R3H domain containing 2
  • Synonyms
    1300003K24Rik, mKIAA1002
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919000
    NCBI Gene: 71750
  • Alliance
    gene page
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:127380332-127499384 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 74.50 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    536 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919000
 protein coding gene Chr10:127380327-127499384 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017822
 protein coding gene Chr10:130979925-131119557 (+)
A/J MGP_AJ_G0017797
 protein coding gene Chr10:125735839-125867739 (+)
AKR/J MGP_AKRJ_G0017760
 protein coding gene Chr10:129449950-129580059 (+)
BALB/cJ MGP_BALBcJ_G0017761
 protein coding gene Chr10:126148471-126270306 (+)
C3H/HeJ MGP_C3HHeJ_G0017585
 protein coding gene Chr10:129607428-129733093 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018216
 protein coding gene Chr10:135423729-135560626 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015896
 protein coding gene Chr10:119730306-119855094 (+)
CAST/EiJ MGP_CASTEiJ_G0017145
 protein coding gene Chr10:130258348-130389971 (+)
CBA/J MGP_CBAJ_G0017554
 protein coding gene Chr10:140882643-141029041 (+)
DBA/2J MGP_DBA2J_G0017660
 protein coding gene Chr10:124818380-124942484 (+)
FVB/NJ MGP_FVBNJ_G0017655
 protein coding gene Chr10:123762715-123882320 (+)
LP/J MGP_LPJ_G0017734
 protein coding gene Chr10:131556508-131690003 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017683
 protein coding gene Chr10:143596012-143724778 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018256
 protein coding gene Chr10:129515040-129648375 (+)
PWK/PhJ MGP_PWKPhJ_G0016930
 protein coding gene Chr10:125023964-125148034 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016722
 protein coding gene Chr10:128568076-128687130 (+)
WSB/EiJ MGP_WSBEiJ_G0017206
 protein coding gene Chr10:129743872-129874819 (+)



Homology
more
  • Human Ortholog
    R3HDM2, R3H domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    R3HDM2, R3H domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAG6, PR01365
  • Links
    NCBI Gene ID: 22864
    neXtProt AC: NX_Q9Y2K5
    UniProt: Q9Y2K5

  • Chr Location
    12q13.3; chr12:57253764-57430999 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 8954
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: R3HDM2
  • Gene Tree
    R3hdm2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    15
  • Tissues
    4
  • cDNA Data
    113
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71750 NCBI Gene Model | MGI Sequence Detail 119053 C57BL/6J ±  kb
transcript NM_001359243 RefSeq | MGI Sequence Detail 4366 C57BL/6  
polypeptide Q80TM6 UniProt | EBI | MGI Sequence Detail 1044 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 113
    cDNA 113

    Microarray probesets 4
Other
Accession IDs
less
MGI:2143757
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/19/2019
MGI 6.13 		The Jackson Laboratory