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Cdc5l Gene Detail
Summary
  • Symbol
    Cdc5l
  • Name
    cell division cycle 5-like (S. pombe)
  • Synonyms
    1200002I02Rik, PCDC5RP
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918952
    NCBI Gene: 71702
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:45702809-45744633 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918952
 protein coding gene Chr17:45702809-45744663 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023786
 protein coding gene Chr17:46397387-46438292 (-)
A/J MGP_AJ_G0023744
 protein coding gene Chr17:45291851-45333744 (-)
AKR/J MGP_AKRJ_G0023715
 protein coding gene Chr17:45590445-45636184 (-)
BALB/cJ MGP_BALBcJ_G0023748
 protein coding gene Chr17:45180019-45223526 (-)
C3H/HeJ MGP_C3HHeJ_G0023512
 protein coding gene Chr17:46307414-46349372 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024191
 protein coding gene Chr17:48395994-48441465 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021641
 protein coding gene Chr17:42089374-42131322 (-)
CAST/EiJ MGP_CASTEiJ_G0022993
 protein coding gene Chr17:46399243-46443839 (-)
CBA/J MGP_CBAJ_G0023488
 protein coding gene Chr17:50116289-50163478 (-)
DBA/2J MGP_DBA2J_G0023614
 protein coding gene Chr17:44085056-44125653 (-)
FVB/NJ MGP_FVBNJ_G0023581
 protein coding gene Chr17:43656828-43699105 (-)
LP/J MGP_LPJ_G0023695
 protein coding gene Chr17:47046521-47089526 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023610
 protein coding gene Chr17:49685429-49730862 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024236
 protein coding gene Chr17:45948385-45996899 (-)
PWK/PhJ MGP_PWKPhJ_G0022738
 protein coding gene Chr17:43378529-43427857 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022553
 protein coding gene Chr17:42824753-42865832 (-)
WSB/EiJ MGP_WSBEiJ_G0023058
 protein coding gene Chr17:46480064-46523051 (-)



Homology
more
  • Human Ortholog
    CDC5L, cell division cycle 5 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDC5L, cell division cycle 5 like
  • Synonyms
    CDC5, CDC5-LIKE, CEF1, dJ319D22.1, PCDC5RP
  • Links
    NCBI Gene ID: 988
    neXtProt AC: NX_Q99459
    UniProt: Q99459

  • Chr Location
    6p21.1; chr6:44387514-44450424 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    41
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    738
  • Tissues
    66
  • cDNA Data
    214
  • Literature Summary
    7
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71702 NCBI Gene Model | MGI Sequence Detail 41825 C57BL/6J ±  kb
transcript NM_152810 RefSeq | MGI Sequence Detail 2994 C57BL/6  
polypeptide Q6A068 UniProt | EBI | MGI Sequence Detail 802 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 215
    cDNA 214
    Primer pair 1

    Microarray probesets 16
Other
Accession IDs
less
MGI:2140730
References
more
  • Summaries
    All 43
    Developmental Gene Expression 7
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:324155 Zhang J, et al., BCAS2 is involved in alternative splicing and mouse oocyte development. FASEB J. 2022 Feb;36(2):e22128
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/23/2022
MGI 6.20 		The Jackson Laboratory