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Colec11
Gene Detail
 Symbol
Name
ID
Colec11
collectin sub-family member 11
MGI:1918943
Synonyms 1010001H16Rik
Feature Type protein coding gene
Genetic Map
Chromosome 12
10.98 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:28594173-28623290 bp, - strand
From NCBI annotation of GRCm38

  29118 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11423  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Colec11

Human
homologs
Human Homolog COLEC11, collectin sub-family member 11
NCBI Gene ID 78989
neXtProt AC  NX_Q9BWP8
Human Synonyms  3MC2, CLK1, CL-K1-I, CL-K1-II, CL-K1-IIa, CL-K1-IIb
Human Chr (Location)  2p25.3; chr2:3594832-3644644 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human COLEC11
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Colec11 interacts with 67 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process multicellular organismal development
Component collagen trimer, extracellular region
Function carbohydrate binding, mannose binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (13)    Tissues (13)    Images (7)
Theiler Stages: 21, 23
Assay TypeResults
Immunohistochemistry 13
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000036655 (Evidence)
Entrez Gene71693 (Evidence)
UniGene30724
DFCITC1587089
DoTSDT.101181552, DT.40162973
NIA Mouse Gene IndexU033863
Consensus CDS ProjectCCDS36426.1
International Mouse Knockout Project StatusColec11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 71693 NCBI Gene Model | MGI Sequence Detail 29118 C57BL/6J ±  kb
transcript NM_027866 RefSeq | MGI Sequence Detail 1383 C57BL/6 
polypeptide Q3SXB8 UniProt | EBI | MGI Sequence Detail 272 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(10) UniProt(1)
Polymorphisms SNPs within 2kb(465 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR001304 C-type lectin
InterPro IPR018378 C-type lectin, conserved site
InterPro IPR016187 C-type lectin fold
InterPro IPR016186 C-type lectin-like
Protein Ontology PR:000005726 collectin-11
Graphical View of Protein Domain Structure
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:170600 Rooryck C, et al., Mutations in lectin complement pathway genes COLEC11 and MASP1 cause 3MC syndrome. Nat Genet. 2011 Mar;43(3):197-203
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory