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Atp5pd Gene Detail
Summary
  • Symbol
    Atp5pd
  • Name
    ATP synthase peripheral stalk subunit d
  • Synonyms
    0610009D10Rik, Atp5h
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918929
    NCBI Gene: 71679
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115306517-115310775 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 11, 80.84 cM, cytoband E2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918929
protein coding gene Chr11:115306515-115310788 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019385
protein coding gene Chr11:119435991-119441661 (-)
A/J MGP_AJ_G0019354
protein coding gene Chr11:114222925-114227332 (-)
AKR/J MGP_AKRJ_G0019324
protein coding gene Chr11:117630105-117634390 (-)
BALB/cJ MGP_BALBcJ_G0019328
protein coding gene Chr11:114636283-114640551 (-)
C3H/HeJ MGP_C3HHeJ_G0019134
protein coding gene Chr11:117980437-117985702 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019778
protein coding gene Chr11:123077864-123083536 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017401
protein coding gene Chr11:111261656-111266222 (-)
CAST/EiJ MGP_CASTEiJ_G0018689
protein coding gene Chr11:119292455-119298539 (-)
CBA/J MGP_CBAJ_G0019106
protein coding gene Chr11:127932779-127937064 (-)
DBA/2J MGP_DBA2J_G0019217
protein coding gene Chr11:113658630-113662896 (-)
FVB/NJ MGP_FVBNJ_G0019209
protein coding gene Chr11:113134190-113138462 (-)
LP/J MGP_LPJ_G0019287
protein coding gene Chr11:119821026-119827300 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019242
protein coding gene Chr11:127108334-127112611 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019816
protein coding gene Chr11:118286167-118290444 (-)
PWK/PhJ MGP_PWKPhJ_G0018453
protein coding gene Chr11:114941267-114945522 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018246
protein coding gene Chr11:118032189-118036442 (-)
WSB/EiJ MGP_WSBEiJ_G0018741
protein coding gene Chr11:118234858-118239125 (-)



Homology
more
  • Human Ortholog
    ATP5PD, ATP synthase peripheral stalk subunit d
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP5PD, ATP synthase peripheral stalk subunit d
  • Synonyms
    APT5H, ATP5H, ATPQ
  • Links
    NCBI Gene ID: 10476
    neXtProt AC: NX_O75947
    UniProt: O75947

  • Chr Location
    17q25.1; chr17:75038863-75046985 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 71679 NCBI Gene Model | MGI Sequence Detail 4259 C57BL/6J ±  kb
transcript NM_001417934 RefSeq | MGI Sequence Detail 757 C57BL/6  
polypeptide Q9DCX2 UniProt | EBI | MGI Sequence Detail 161 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004459 ATP synthase subunit d, mitochondrial
  • InterPro Domains
    IPR008689 ATP synthase, F0 complex, subunit D, mitochondrial
    IPR036228 ATP synthase, F0 complex, subunit D superfamily, mitochondrial
Molecular
Reagents
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  • All nucleic 69
    cDNA 68
    Primer pair 1

    Microarray probesets 5
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Gene Ontology 10
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:301602 Li Y, et al., MFSD7C switches mitochondrial ATP synthesis to thermogenesis in response to heme. Nat Commun. 2020 Sep 24;11(1):4837

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory