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Atraid
Gene Detail
Symbol

Name
ID
Atraid
all-trans retinoic acid induced differentiation factor
MGI:1918918
Synonyms
0610007C21Rik, HSPC013, p18
Feature Type
protein coding gene
Genetic Map
Chromosome 5
16.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr5:31048312-31054633 bp, + strand
From VEGA annotation of GRCm38

  6322 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:15412  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Atraid

Human
homologs
Human Homolog ATRAID, all-trans retinoic acid-induced differentiation factor
NCBI Gene ID 51374
neXtProt AC  NX_Q6UW56
Human Synonyms  APR3, APR-3, APR--3, C2orf28, p18, PRO240
Human Chr (Location)  2p23.3; chr2:27212031-27217178 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(8) Radiation induced(2) Targeted(2)
Genomic Mutations involving Atraid (2)
Incidental mutations (data from APF )
 
Mice heterozygous or homozygous for a gene trap mutation ehibit cataracts.
 
Alleles Annotated to Human Diseases(1)   
Interactions
Atraid interacts with 106 markers (Mir16-1, Mir17, Mir18, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cell differentiation, negative regulation of cyclin catabolic process, ...
Component integral component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(72)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(72) cDNA(72)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000022387 (Evidence)
Ensembl Gene ModelENSMUSG00000013622 (Evidence)
Entrez Gene381629 (Evidence)
UniGene28144
DFCITC1594452, TC1576642
NIA Mouse Gene IndexU005433
Consensus CDS ProjectCCDS19170.1, CCDS39052.1
International Mouse Knockout Project StatusAtraid
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022387 VEGA Gene Model | MGI Sequence Detail 6322 C57BL/6J ±  kb
transcript OTTMUST00000053482 VEGA | MGI Sequence Detail 976 Not Applicable 
polypeptide OTTMUSP00000025430 VEGA | MGI Sequence Detail 223 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(4) UniProt(11)
Polymorphisms
SNPs within 2kb(48 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013032 EGF-like, conserved site
InterPro IPR000742 Epidermal growth factor-like domain
Protein Ontology PR:000004173 apoptosis-related protein 3
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(35)
Other
accession IDs
MGI:2140831

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory