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Atraid Gene Detail
Summary
  • Symbol
    Atraid
  • Name
    all-trans retinoic acid induced differentiation factor
  • Synonyms
    0610007C21Rik, HSPC013, p18
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918918
    NCBI Gene: 381629
  • Gene Overview
    MyGene.info: ATRAID
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:31048640-31054633 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 16.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918918
protein coding gene Chr5:31048312-31054633 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029406
protein coding gene Chr5:29016058-29024058 (+)
A/J MGP_AJ_G0029372
protein coding gene Chr5:28073584-28079912 (+)
AKR/J MGP_AKRJ_G0029323
protein coding gene Chr5:29223016-29231197 (+)
BALB/cJ MGP_BALBcJ_G0029383
protein coding gene Chr5:28590983-28597315 (+)
C3H/HeJ MGP_C3HHeJ_G0029104
protein coding gene Chr5:29236906-29244109 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029836
protein coding gene Chr5:30806071-30817061 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027074
protein coding gene Chr5:25543499-25549813 (+)
CAST/EiJ MGP_CASTEiJ_G0028514
protein coding gene Chr5:28323029-28329227 (+)
CBA/J MGP_CBAJ_G0029072
protein coding gene Chr5:31378813-31391800 (+)
DBA/2J MGP_DBA2J_G0029221
protein coding gene Chr5:28251611-28258013 (+)
FVB/NJ MGP_FVBNJ_G0029179
protein coding gene Chr5:27667958-27675749 (+)
LP/J MGP_LPJ_G0029306
protein coding gene Chr5:29478895-29485090 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029208
protein coding gene Chr5:32262088-32270093 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029870
protein coding gene Chr5:28729156-28738430 (+)
PWK/PhJ MGP_PWKPhJ_G0028239
protein coding gene Chr5:27373851-27380161 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028069
protein coding gene Chr5:28104458-28111343 (+)
WSB/EiJ MGP_WSBEiJ_G0028595
protein coding gene Chr5:28797346-28803644 (+)



Homology
more
  • Human Ortholog
    ATRAID, all-trans retinoic acid induced differentiation factor
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ATRAID, all-trans retinoic acid induced differentiation factor
    Orthology source: HGNC, HomoloGene
  • Synonyms
    APR3, APR-3, APR--3, C2orf28, HSPC013, p18, PRO240
  • Links
    NCBI Gene ID: 51374
    neXtProt AC: NX_Q6UW56
    UniProt: Q6UW56

  • Chr Location
    2p23.3; chr2:27212031-27217178 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    15
  • Chemically induced (other)
    2
  • Gene trapped
    8
  • Radiation induced
    2
  • Spontaneous
    1
  • Targeted
    2
  • Genomic Mutations
    5 involving Atraid
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Mice heterozygous or homozygous for a gene trap mutation exhibit cataracts.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 381629 NCBI Gene Model | MGI Sequence Detail 5994 C57BL/6J ±  kb
transcript NM_027855 RefSeq | MGI Sequence Detail 971 C57BL/6  
polypeptide Q6PGD0 UniProt | EBI | MGI Sequence Detail 223 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 73
    cDNA 73

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140831
References
more
  • Summaries
    All 54
    Diseases 1
    Gene Ontology 3
    Phenotypes 28
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:221583 Ding X, et al., Apoptosis related protein 3 is a lysosomal membrane protein. Biochem Biophys Res Commun. 2015 May 15;460(4):915-22

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory