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Shtn1 Gene Detail
Summary
  • Symbol
    Shtn1
  • Name
    shootin 1
  • Synonyms
    4930506M07Rik, shootin1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918903
    NCBI Gene: 71653
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:58973358-59076069 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 54.56 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    653 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918903
protein coding gene Chr19:58973358-59076124 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025284
protein coding gene Chr19:59471624-59579615 (-)
A/J MGP_AJ_G0025260
protein coding gene Chr19:56562882-56665067 (-)
AKR/J MGP_AKRJ_G0025229
protein coding gene Chr19:58327000-58432086 (-)
BALB/cJ MGP_BALBcJ_G0025255
protein coding gene Chr19:56634331-56735427 (-)
C3H/HeJ MGP_C3HHeJ_G0025015
protein coding gene Chr19:58584895-58686548 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025698
protein coding gene Chr19:60912822-61015045 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023110
protein coding gene Chr19:55444426-55546577 (-)
CAST/EiJ MGP_CASTEiJ_G0024480
protein coding gene Chr19:58664944-58768064 (-)
CBA/J MGP_CBAJ_G0024995
protein coding gene Chr19:63886611-63990642 (-)
DBA/2J MGP_DBA2J_G0025127
protein coding gene Chr19:56310965-56411734 (-)
FVB/NJ MGP_FVBNJ_G0025088
protein coding gene Chr19:56050879-56151670 (-)
LP/J MGP_LPJ_G0025213
protein coding gene Chr19:59353497-59457836 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025121
protein coding gene Chr19:63118146-63220761 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025756
protein coding gene Chr19:58562375-58665139 (-)
PWK/PhJ MGP_PWKPhJ_G0024228
protein coding gene Chr19:56314697-56416337 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024031
protein coding gene Chr19:57228278-57332260 (-)
WSB/EiJ MGP_WSBEiJ_G0024550
protein coding gene Chr19:58679960-58782144 (-)



Homology
more
  • Human Ortholog
    SHTN1, shootin 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SHTN1, shootin 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    KIAA1598, shootin-1
  • Links
    NCBI Gene ID: 57698
    neXtProt AC: NX_A0MZ66
    UniProt: A0MZ66

  • Chr Location
    10q25.3; chr10:116883377-117126586 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 41249
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SHTN1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041362 Ensembl Gene Model | MGI Sequence Detail 102712 C57BL/6J ±  kb
transcript ENSMUST00000047511 Ensembl | MGI Sequence Detail 4081 Not Applicable  
polypeptide ENSMUSP00000041378 Ensembl | MGI Sequence Detail 631 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:199805 Sapir T, et al., Shootin1 Acts in Concert with KIF20B to Promote Polarization of Migrating Neurons. J Neurosci. 2013 Jul 17;33(29):11932-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory