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Scn3b Gene Detail
Summary
  • Symbol
    Scn3b
  • Name
    sodium channel, voltage-gated, type III, beta
  • Synonyms
    1110001K16Rik, 4833414B02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918882
    NCBI Gene: 235281
  • Gene Overview
    MyGene.info: SCN3B
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:40269217-40291618 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 21.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    188 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918882
protein coding gene Chr9:40269187-40291618 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034666
protein coding gene Chr9:38474520-38494563 (+)
A/J MGP_AJ_G0034646
protein coding gene Chr9:37457311-37479466 (+)
AKR/J MGP_AKRJ_G0034572
protein coding gene Chr9:38183442-38208419 (+)
BALB/cJ MGP_BALBcJ_G0034637
protein coding gene Chr9:37235987-37259273 (+)
C3H/HeJ MGP_C3HHeJ_G0034348
protein coding gene Chr9:38701255-38723338 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035160
protein coding gene Chr9:39708756-39733496 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032073
protein coding gene Chr9:37129258-37151317 (+)
CAST/EiJ MGP_CASTEiJ_G0033671
protein coding gene Chr9:38438399-38461578 (+)
CBA/J MGP_CBAJ_G0034321
protein coding gene Chr9:41073062-41094665 (+)
DBA/2J MGP_DBA2J_G0034480
protein coding gene Chr9:37427145-37451594 (+)
FVB/NJ MGP_FVBNJ_G0034420
protein coding gene Chr9:36655331-36677042 (+)
LP/J MGP_LPJ_G0034561
protein coding gene Chr9:38751466-38775732 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034464
protein coding gene Chr9:43122725-43143609 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035179
protein coding gene Chr9:38110622-38138772 (+)
PWK/PhJ MGP_PWKPhJ_G0033375
protein coding gene Chr9:37239294-37261186 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033212
protein coding gene Chr9:38347664-38369063 (+)
WSB/EiJ MGP_WSBEiJ_G0033783
protein coding gene Chr9:38123273-38146464 (+)



Homology
more
  • Human Ortholog
    SCN3B, sodium voltage-gated channel beta subunit 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SCN3B, sodium voltage-gated channel beta subunit 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATFB16, BRGDA7, HSA243396, SCNB3
  • Links
    NCBI Gene ID: 55800
    neXtProt AC: NX_Q9NY72
    UniProt: Q9NY72

  • Chr Location
    11q24.1; chr11:123629187-123654607 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with Scn3b mouse models; 1 with human SCN3B associations

Human Disease Mouse Models
      
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 2 alleles in 2 genetic backgrounds
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit a ventricular arrhythmogenic phenotype with abnormal heart electrocardiography waveform features and sodium channel function.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000049281 Ensembl Gene Model | MGI Sequence Detail 22402 C57BL/6J ±  kb
    transcript ENSMUST00000049941 Ensembl | MGI Sequence Detail 4150 Not Applicable  
    polypeptide ENSMUSP00000051627 Ensembl | MGI Sequence Detail 215 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 65
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1915810
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 12
      Diseases 1
      Gene Ontology 9
      Phenotypes 5
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:220736 Bye CR, et al., Transcriptome analysis reveals transmembrane targets on transplantable midbrain dopamine progenitors. Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):E1946-55

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory