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Snx20 Gene Detail
Summary
  • Symbol
    Snx20
  • Name
    sorting nexin 20
  • Synonyms
    9130017C17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918857
    NCBI Gene: 71607
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:88626563-88636128 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 43.51 cM, cytoband C4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918857
protein coding gene Chr8:88626561-88636130 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033921
protein coding gene Chr8:89718620-89728020 (-)
A/J MGP_AJ_G0033904
protein coding gene Chr8:86192685-86202096 (-)
AKR/J MGP_AKRJ_G0033830
protein coding gene Chr8:88733746-88742976 (-)
BALB/cJ MGP_BALBcJ_G0033897
protein coding gene Chr8:86350840-86360242 (-)
C3H/HeJ MGP_C3HHeJ_G0033607
protein coding gene Chr8:89330038-89339311 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034417
protein coding gene Chr8:93101674-93110959 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031359
protein coding gene Chr8:80159450-80168451 (-)
CAST/EiJ MGP_CASTEiJ_G0032938
protein coding gene Chr8:88774832-88784032 (-)
CBA/J MGP_CBAJ_G0033583
protein coding gene Chr8:96247555-96256935 (-)
DBA/2J MGP_DBA2J_G0033736
protein coding gene Chr8:85780693-85789901 (-)
FVB/NJ MGP_FVBNJ_G0033683
protein coding gene Chr8:84744586-84753966 (-)
LP/J MGP_LPJ_G0033828
protein coding gene Chr8:89837297-89846699 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033726
protein coding gene Chr8:98702524-98711757 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034436
protein coding gene Chr8:88741413-88750639 (-)
PWK/PhJ MGP_PWKPhJ_G0032641
protein coding gene Chr8:85053922-85063321 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032477
protein coding gene Chr8:87546153-87555416 (-)
WSB/EiJ MGP_WSBEiJ_G0033049
protein coding gene Chr8:89194728-89203934 (-)



Homology
more
  • Human Ortholog
    SNX20, sorting nexin 20
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SNX20, sorting nexin 20
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SLIC1
  • Links
    NCBI Gene ID: 124460
    neXtProt AC: NX_Q7Z614
    UniProt: Q7Z614

  • Chr Location
    16q12.1; chr16:50666300-50681353 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    27 phenotype references
Homozygous null mice are viable and healthy with no apparent defects in neutrophil morphology or physiology.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031662 Ensembl Gene Model | MGI Sequence Detail 9566 C57BL/6J ±  kb
transcript ENSMUST00000034087 Ensembl | MGI Sequence Detail 1699 Not Applicable  
polypeptide ENSMUSP00000034087 Ensembl | MGI Sequence Detail 313 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 3
References
more
  • Summaries
    All 50
    Gene Ontology 4
    Phenotypes 27
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54:113-145
  • Latest
    J:266142 Grosjean F, et al., Pharmacologic control of oxidative stress and inflammation determines whether diabetic glomerulosclerosis progresses or decreases: A pilot study in sclerosis-prone mice. PLoS One. 2018;13(9):e0204366

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory