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Pogk Gene Detail
Summary
  • Symbol
    Pogk
  • Name
    pogo transposable element with KRAB domain
  • Synonyms
    9130401E23Rik, BASS2, mKIAA1513
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918842
    NCBI Gene: 71592
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:166393610-166409850 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 73.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    234 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918842
protein coding gene Chr1:166384622-166409863 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016705
protein coding gene Chr1:171908390-171936103 (-)
A/J MGP_AJ_G0016686
protein coding gene Chr1:164913088-164938138 (-)
AKR/J MGP_AKRJ_G0016652
protein coding gene Chr1:169884102-169909162 (-)
BALB/cJ MGP_BALBcJ_G0016647
protein coding gene Chr1:165382508-165407576 (-)
C3H/HeJ MGP_C3HHeJ_G0016471
protein coding gene Chr1:170105277-170130306 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017108
protein coding gene Chr1:177661751-177686850 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014817
protein coding gene Chr1:156770488-156796927 (-)
CAST/EiJ MGP_CASTEiJ_G0016051
protein coding gene Chr1:169699387-169726119 (-)
CBA/J MGP_CBAJ_G0016446
protein coding gene Chr1:183977516-184005000 (-)
DBA/2J MGP_DBA2J_G0016552
protein coding gene Chr1:163776754-163801920 (-)
FVB/NJ MGP_FVBNJ_G0016550
protein coding gene Chr1:162207073-162232499 (-)
LP/J MGP_LPJ_G0016623
protein coding gene Chr1:172992742-173019317 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016575
protein coding gene Chr1:191419705-191445501 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017144
protein coding gene Chr1:169747191-169772947 (-)
PWK/PhJ MGP_PWKPhJ_G0015837
protein coding gene Chr1:162984438-163010155 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015624
protein coding gene Chr1:168586160-168612335 (-)
WSB/EiJ MGP_WSBEiJ_G0016113
protein coding gene Chr1:169895928-169921016 (-)



Homology
more
  • Human Ortholog
    POGK, pogo transposable element derived with KRAB domain
  • Vertebrate Orthologs
    10
  • Human Ortholog
    POGK, pogo transposable element derived with KRAB domain
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BASS2, KRBOX2, LST003
  • Links
    NCBI Gene ID: 57645
    neXtProt AC: NX_Q9P215
    UniProt: Q9P215

  • Chr Location
    1q24.1; chr1:166839404-166856344 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 32346
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;2 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: POGK
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71592 NCBI Gene Model | MGI Sequence Detail 16241 C57BL/6J ±  kb
transcript NM_175170 RefSeq | MGI Sequence Detail 7385 C57BL/6  
polypeptide Q80TC5 UniProt | EBI | MGI Sequence Detail 607 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:156017 Yokoyama S, et al., A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Dev Cell. 2009 Dec;17(6):836-48

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory